Detail information of BGIOSGA016654_circ_ag.1


General Information
CircRNA Name BGIOSGA016654_circ_ag.1
ID in PlantcircBase osi_circ_014484
Alias Chr04:25017544_25021909(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 22958407-22962771  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCATGGGCTCCGACCTCGTCCGCCCTCGCGTCGCTGTGCACGCGCTCGTGTCGGCCGCCGCC
CGCGGCTTCGTGGACGTGGTGGACTCGCTCATCAAGgcattcgagttggtggaaaccttggacg
acatttcaaatgggcctagcgggcactgccaagtgccatctccacacccaataggtgctagata
aaagttgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCATTCGAGTTGGTGGAAACCTTGGACGACATTTCAAATGGGCCTAGCGGGCACTGCCAAGTGC
CATCTCCACACCCAATAGGTGCTAGATAAAAGTTGCCCACTGTTCAGTCTAATGATCTCTTTTT
TTTTTCATGGTTGCTCAGGTAGTAGTATTGTTTTTCTATGTGCCCATGATGATTTTAATGTACT
GTATAAATGCACGCGCTAGACAAATATCATCCTTTTTTAAAAAGTTTTATCGCCATTTTTAATA
AGCCCAAATTATGAGTAGAAGTAGGACTTGTTGGAAAGAAAAAATAAGTATACTTCCAAACTTC
GCTAACTTTTATTGTCGCTCTCTATGATATTGGAACTTCTTTTCATTTTTTTGGTGGGAAACCA
TAACGGAAAAAGTTACTCATCATGAGATATTTTCCAAAGTTTTAGACCGAATTATGTGCTTCTT
TAGCAAAGTTTTTTTTTATAGGCATTAGCAAAATATTTTTATGAACTTGTATTTTTACAGTTAT
ACTACTATTAGTTTCTAGAAGGTAAGTTACCAAGTACCAGCCCCGCATGGCTGCAAATCTGCAA
TGGGACCATGCTTTGCATTGCAGATTTGCAGTTCGTTTTTAATGCGTACGGACATATTTGTTCT
ATATACCGATGATAAAAATCTGGAATTGGGACAAGCAAATAGGCAGGGAAGCTTCCTGGGCACT
CTTTATTGTCTAGAAATACGTGTACGCATTGATCAAGGTGTACACGCATACATACGGTATAGTA
TGCCTGTATTTTAGTATCAGTACCATCAAAAGCATCTCCTATTAGCAAATGTGGTTTCCAAGCA
TTTCCTATAAGCAAATGTACCATCAAAATGCATTTCCTATAAGCAAGGATACGATGCTGTGCGC
GCATTTCCTATTGGCGAATGTGGTTTCCAAGCATTTCCTATAAGCAAATATACCATCAAACGCA
TTTCCTATAAGCAAGGATACGATACTGTGCGCAAGTACCCTGCTAAAGATTCTGATTTCCAGTA
ACTTCTCCCTGCTGCTTCCAGCATCATGCATGCTGCGACTAGAAGGTAAGCCTAATTATATACA
CTGCGTGAGTGAGAGTGTTTTTAGCTCGAGAGGACTGGTGCTTGGGGGACAGGGGTAGATGGGT
TTGACTTTACCTGACCAAAGCCTCTTTGTTTACTGCTGCTGATAATATAATGAATCATTCCTTT
AGCAAAATTGATAATGTAATGAATCTGTGTAAGCATCAGAGGGCACTGGTGTTAAGTACTCCTC
CATAGTGTACCGGGCTTAAGTACTTAAGTACCAGCTCAACGCTTTGGTAGAAACCAATATATTC
CCCTCGTGAGCTTGGTCGGGGGTGGGATCACGTGATCTGCTTGGCTCTGCTCTTCCGGTCTCCC
CTCGTTTGATCTCTCCTGTTGATGCAGGAGTACTTACTCCCGGTAATCTTGAGAGTGTAGTTAC
GCTTTGGTGCTGGATCCTATGGTACTTTGCATTGGGCCCTGTCACCCTAATCACACTCACGACT
CATTCAACCCCCTCGGGGTCCCACATGCCCGTCACTCTTGTGATCCTGATCGCGTCACCGCGAT
CGGACGGCTAGGGGTACTTTCTGACCATCGGAGAAGTAGTGTTGGTGGATGATGGCTGACGAGT
GGAGAGGTGTGGTGCGCGGACCGGGTGATCCGCCGATGTCATGGGGCAGCATTGAATTGAATGG
GAGTGGCAAGGGACTAGGGGAGTGGTTTGCGCTGCGACGGGGCGTAGGGGAGCAGCCGGGCACG
GCCATGCGTGTACTTCTTCTTCTTGTTTTTTTTTTTGCCTTGCAGGCAGATGAGCTCGCACGGG
CCACGGCCATGAGGGCCTCTGTACGACTGTACCGGCGCGTTCCATGGCCTCTGCAAAAGATCAA
TAAATGCCATTGCCAAGGACGGCAGCCACCATAGCCGTGGCTTTTATCCCAAAACGCATAGGAG
GTGAAAATGTGGAGGATCTTTTTTTTTCACAGAGGAAAAAAGGATTGAAGAACCCGTTTGGTGA
GCATGAAATGCATGCATGCATGTCATGCTAGCTGTCCATCACTAATCATTGCTCCATGCACTCT
CTGATCTTCATTTTGCGGGGCCTCCTCTTCTTCTTGGAACGTCACCCTGACTCCCACAGGCCAC
AGACTGTGGAATCAGCCGTGAACTGCTCATCAATAATCACCTCTCAATGCACTCTTTGTTCTGC
ATTTTGCGGGGTCTTCCATCCTCTTTTCTGCATTTTGCGCCGGGGTCTTCCATCCTCTACACTG
GAATATCTCCCTGTCTACCCACAGTCCATAGACTGAACTGACTCCGAGAGTCCGAGGTCAGGTG
GCCATCCAAAGGCCAGCGTCGCTCGGCAGCTCAGCTCATGTCATGTCTCCCGGGCTCTGGCCAT
GCGCAACATCATCAGTGAGTTCACATGTTCTGCACCTGGGTACACAGCCAAGTAACCGGATCCG
ATGTCCGCCGCTTCCAATACGTCCAAGCCGCACCAGCTGTATTTGATCACGCCTTAGAAATGAA
AAACCCAACTCCTCACCGGAGTATAGCCCCGATCTGGCCGCGGCCTCCTCCACGGCAGGCAGCG
CCAAGGGCCTCCCTATTAACTGACAGCAACGCGCACGTCGCCGCCCAGGTGCGACGCATCGATG
TGTGCCCCCACACCGGCGCCTGATCGATCGGCTGGGCCGACGCGGGTACGGATGGATGGCTGCT
CCTTCGCTCGCTCTCCTCGCGCACCCCGTATGTGTGGACGGTGTCGTGTTCTTCTTTGCCCTGT
AGCCATCTGCTTCCCCTGCCACCGGCCGGCCGCGCGGCCAGCTGTATCCTCCCTTGCTGCTGCA
CGCACCTGGCGCCCATGCAACGCACAGCGCCTCTCGCGTACGGCCCGTGGGGGCTTCGCCGATC
GGGCATCTGCGTATGCCGGCCGCTGCTCAGCCCCGCGTGTGCTCATGGCCTGATGGCCCCCGGT
GGAATATTGATGGTGGCATGGGGATGCCAGTGTGCCACGTAAGTGCTGTTTGAGAACATCACCT
CGGTTCAGAGTTTTCAGAGTGGTAAATAGCAGCATGCACAGCACTGTACTCGTGGTGGTGCGAC
GAATTTATTGTGTGATGAGAATCCTGGATGTGGAATTGAATGCGTCTCTTGTCTTGTTGTCCGA
TGGATCTTGATAAAATGCCAAGGGTTGGTTAAGCAGGAGTTTACAATTTGTATGATGTGTCCTG
ATGGTGGGATCATCAGAATCAGAATGTAGGAGTAGCAAGGACCAAAGGACTAGCATCTTTTATT
TCTGAGCCTGCATTGTTCATTTCTTGCTCCATTTGTCTTTCCGTGAACTTCATTTTCTCTAAGA
GCAAATGTTCAAGGATGGGTAGTTAAATATTCTTATATATGATGTTGAAAGAGATAAATGGTTC
CAGTTTAGATAATTTTCAGTTAGCTGTGGCCAACTACTGTATTCAGCGAGGCTGAGCTGACATT
GCGGTGAAACCACACATCAAGATTTCATATATCGATGGATAGCATCACCCTGCAGAATTTTGAC
CAGATTCCTTCTTCCAGTAGGAGGCCCCTTCTGTCTCTTGCTATATGAATCATGGCACAGTGCC
ATTGCCACAGGACTTGCACAGACTGGCTAGCCAGTCCATTGGTTACCAAGTCTCCACATCACCG
ACCTGACCAGACATAGTAGTAACAGCGACATTTGTTACTCGGCCAGCTATGTTTCCAAGTCCCG
ATGGCTGTTGTTGTGCCCTGTTCTGTGCTACTGTGTTGGTCCATCCTGATGGTACCCCTTATCC
CGCGGTGTGTGGAGCAATGTAGGTGAAAGAGAGAGCATGCGGTAAAAGGAGAAACTGTACTAGG
CATATCAGTTCTTGTTTGCTGAGTTACTGTCCAAAATCTGAGAAAATTGTTTGATCAACTTGTG
CTAACATTATCGTTTTGGCTATGTTCATATCATTACAAGCAGAAACTTGTGTCTAGAGCAACCA
GAAGTACATTCTTTAGCACAGTCTAATGTTTGGCGCAAATGTGCATCGCTCCTGCAGGCGAAGG
GGGCGGACGTGAACGGCAAGGTGTTCCGTGGGTACCCGGCGACGGCCGCGGCGCGGGAGGGGCG
CGCGGAGGTGGCGGCGTTGCTGGTGCGCGCCGGGGCGTCGCAGCCGGCGTGCGAGGAGGCCGTC
GTGGAGGCGGCGCTGCAGGGGCAGGCCGCCCTCGCCGTCATCTTCATGGGCTCCGACCTCGTCC
GCCCTCGCGTCGCTGTGCACGCGCTCGTGTCGGCCGCCGCCCGCGGCTTCGTGGACGTGGTGGA
CTCGCTCATCAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021