Detail information of Zm00001d042707_circ_ig.1


General Information
CircRNA Name Zm00001d042707_circ_ig.1
ID in PlantcircBase zma_circ_007721
Alias zma_circ_0001236
Organism Zea mays
Position chr3: 177671364-177675931  JBrowse»
Reference genome AGPv4.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTTGAGAGTATCAGGGAAAGGCTTATCCCTTATCTGTTAGTCAGTTGAGACTTGAGAGCTGG
GCGCCTCTAATCTATAAAGAGGACAGTAGATTGTACcaggatttttatcgaagaagtaaaaccc
ggttgggaactcctttggtcatcgtggccgcgtctccgcagcttcgttgacgatgttcccacct
gttcgcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGGATTTTTATCGAAGAAGTAAAACCCGGTTGGGAACTCCTTTGGTCATCGTGGCCGCGTCTC
CGCAGCTTCGTTGACGATGTTCCCACCTGTTCGCCTTATCCCCTGCGATCTCTCTCCCAATCCC
ACCTTCTCCACTCACCACTCAGATCACCCAAGCGTTCACGCCATATCAAATTGGTATCAGAGAC
GGCTGACGCATTGCCATCCATGTTTGGCGTCAGTGACGATTCTGGGGCTCTGACCGACTCCGCC
AAATTGGTCAGGATCTTGGCGCAGCTCACCACCATTAACACCCGCGTGGATTCCCATGATCAAA
GGCTGGCTTGGCTGGAAGATGATCAAGGAGGCTAGACAACATCCAAACAGGAAATCAATCCATG
CCAGGAGACGTCACCCACCACGGGCGGAGGATCGACCCTGGGCACGAGCGCGACCTCTAGGGTC
GCGGCTCTACCCCAGTGACGGGTGACCAGCATGGCAACATCATAGAAACTGCGGCCACCGTGAG
CACTTCGACAGCGACAGACCACCACGACCGAAGATCAGTTTCCCTACATACGACGGCGAGGCCG
ATCCCCTACCATGGCTCAACAAGTGCAACACTTACTTCAGAGGAATGAGGACATGGGGGCATGA
AAAAGTCTGGCAGGCTTCCTTGCACCTAGAGGGCATTGCAGCAGAGTGGTTCTACACACTCGAA
CATGACATTGGTGGCGTCCTCATATGGCTCTGTTTCTTAGAGTTTATTAACATGAGATTCAGAC
CTCCCTTACACACAGATTTGAAGGAGTCACCGCATCAGAACTGTTGAAGGTTACCAGCGTCAGT
TTCTCAAGCTCCTGTGCCGGTGTGATGATATGACCCAGCAACAACAGACCAATATGTTCACAGC
AGGCCTAGGAGAACCCCTACGCAGAAACGTCGAGTTGGTGGGACCGACAAACCTGCAACACGCC
TTGCACTTGGCAAGGGCATTCGAGCGGCGGCTGGCGTCAGCATGCACTGCCACTCGCTCTTCAT
CCTCCAACTCATCCTCCAGATCCGGGGCTACCAAACCTGCAACATCGACGACAAGTCGACCGCG
TCTCCGTCGTCTTTCTCCTGACGAACTTGCAGCCAAAAGAGCCAATGAGGAATGCTATCACTGC
TCAGAGAAACATTCGCTAGATCACAAGTGTGCAGGTCGTGGGGTATTTCTCCTGGAATTGGAAT
ATGATGACAACACAGAAACCATCAGTACCAGAAGACCTCGGCATCTCCCTCCATGCCATCACGG
GGATTGACGTCGCCGAAACACTGAAGCCGCCAGTCACTATTAATGGTGTCACCCTCACTGCCCT
GGTGGACTCAAGATCGACTCACACATTCCGCGCCAACGCATCAGCTGCTCGTCTTGGCCTCTAG
GTGACGCCCCTGGCTGGTCTCTCAGTTCTAGTGGCCAATGGAGACCATGTCACCAGCAAGGGCC
GCACCGTGGCGACCATCACCATCGGCAATGAGTCCTTCACCACAACCTGCTAGTCCTTACCCCA
GGATGGCTTCGACGTGGTGCCGGGGATTGAATGGCTGCGATCCCTAGGCCCCATCATCTGCAAC
TCTGACAAGCTGACAATGGTCTTCTGGCGCCTGGTGCACTGGACTGGACTAGGGGCCACGCCAC
CCCACTGCGCAGCCTTGGACGTGAGTCAGGGACTCCTAGATTCACTGCTGGAATCATTCTCAGA
TTTGTTTGAAGAACCAACTGATCTTCCTCCCCCACGTCGCCATGATCACCATATTCACCTACTA
CCTGGGACAACACCAGTGGCAGTACGTCCCTACTGTTACCCCCAGTTGCTCAAGGATGAGATTG
AGCGCCAATATGATCAGATGCTTCACCAAGTTATCATCCGCGAGTGTACATCGACTTTCTCTTC
ACCAATATTGCTCGTCAAGAAGGCGAATAAAACATGGCGTTTTTGTATCGACTACCGCGAACTA
AACGCCACTCCAGTGGTGAAGGAACTGCTTGACGAATTACGGAGGGCACACTTCACAAAACTGG
ATCTCCGCAGTGGGTACCATCAAGTCCGCATGCATCCTGACGATATTGATAAGACAACACTAAT
GAATGAAGTTCTCAAGTCATTGATCTGCAAGTGTGTGCTGGTTTTCTTCGACGACAACCTGATT
TTCAGCAAGTCCTGGGCAGAACATCTCCAGCATGTGAAACAAGTATTCCAGCTGCTACGTGAGC
ACAAGCTAGCACTGAAACGCTCCAAATGCTCCTTTGCAGCACATTCTGTGGCATATCTCAGCCA
TATTATTTCCAATCAAGGGGTGTCCATGGATCCTTCCAAGGTGGATGCAGTTGAATCTTGGCCG
CGTCCACAATCGCTGCGAGCTCTACGCGGGTTCCTCGGCCTAACTGGCTATTACCGCAAGTTCA
TTGCAGGATATGGCGCGGTAGCAGCACCTCTCACTGCCCTACTTAAGCGGGAAGCTTTCAAGTG
GTCTCAGGAAGCCAAAGATGCCTTCAGTCATTTAAAACAGTCCCTAATGACAGCACCATTACTG
CGATACCTCGGGAGCAGGATTTGGTGCGGTTCTGCACCAGGGAGATGGCGCAATAGCCTATTTC
AGCAGGGCTGTTTCTCCTCACCATCTGAAACTTCCGGCTTATGAGCGTGAACTAATTGGGTTGG
TCAAAGCAGTTCGCCACTGGCGGCCTTATGTTTGGGGCCGTATTTTCATCGTCAGAACAGATTA
AGCTTGAAGTATCTGTTGGACCAGCGCCTATCAACCATTCCTCAACACACGTGGGTAAGCAAGC
TGTTTGGCTATGACTTCACAGTCGAATACAAGCCAGGCAAGCTGAATGGGCTGCAGACGCCTTG
TCTAGGCGCGAGAAGGGTCCCTTGCTGTTGCTACCATCTCTACCCCAACCTTCGAGCTGTTTGA
GGCCTTGCGAACAGAGGCAGCTCAGGATCCTCAGATTGCTACCCTACAACAGCAACTAGCCGAT
GGCACAGCCCCAGCCGGCTGGTCACAGGCAGATGGTCTTCTTCTCTTCTAGGGCATAGTTTTTG
TACCAGATGCTTCTGCCTTGTGGCCACACATGGTGGCTCATGCACATAACTCAGAACATGAAGG
CATCCAAAAGACAGCGAACAGATGGAAATCCACATTCTACAACCCACACGCACTCCGGCGGGTT
CGTGAGTTTGTTCACAGTTGTGCTGTCTGCCAAAAGAACAAAACTGAGCACCTTCATCCGGTGG
GTCTTCTTCAGCCGCTTCAATTTCCATCTGAAATCTGGAGTGATATATCCATGGATTTCATTGA
AGGGTTTCCACGTATTGCTGACAAGTCTGTGATTCTCACTGTGGTGGACAGATTCTCCAAGCTT
GCCCATTTCATTCCCTTGAGCCATCCTTACACAGCAGCATCTGTGGCCAAAGCTTTCTTGGATG
AGATTGTTCGACTCCATGGGTTACCATGCTCAATAGTCAGTGACCGTGACACCATCTTCACCAG
CCTCTTCTGGACTGAACTGTTTCAGCTAGCTGGAGTAAAACTGCACATGAATTCAGCATTTCAC
CCTCAATCCGATGGACAGTTTGAGGTGGTCAACCGAACTATTACCATGTACCTCCGTTGCCTAG
CAGGAGATCGGCCAAAGGCATGGTTGAAATGGCTTCCATGGGCGGAATTCTGCTACAACTCCTC
ATACCAGACAGCTCTCAAGTGCTCTCCTTTCCAAGTTGTCTATGGACGGGAGCCCCCTGCCATG
CTGCCATACCAGCACGGCTCAGCTCGAGTTGCAGCGGTCGACACACAGCTCCAGGCACGGGATG
AATTCTTGACTGAGATACAGGACAGACTGATACAATCACAAGTGACTATGAAAGCTTACCAGGA
TAAGAAGAGAAGAGAGCTGGAGTTTGCTGCAGGAGATTGGGTGTGGCTGCGACTACATCAACGA
ACAACTGTAGACTGACATCTGCTGCACCTTCCAAACTTGGGCCCAAATATTTCAGGCCCTATCA
GGTTGTGCAGAAGGTTGGCCACGTCTCCTAGAAACTGCAACTTCCTCCACTGGCTAGGATCCAT
GATGTTTTCCACGTTTCTATGCTCAAGAAGTATGAAGGTGCTCCACCCTCTCAAGTCGTTCCAC
TGCCTGAACTGCTGCATGGGCGTGTCATTCCTACTCCAGAGCGGGTGCTTCGAGCAAGGCTGAA
CAGAGGTGTTTGGGAGATACTGGTCAAGTGGACAGGTCGTGCTGAAGAAGATACATCATTGGAG
CAGGTCACTGAGTTCAAGCAGAGATATCCAGCATTTCAGCTCGCGGACGAGCTCTTTGTTGGCC
AGGGGGGGAATTGTTGTCGATGCCTTCCTAGGGGAACACTACAGGCGCAGGCAGCAGTAGGTTG
GTCGGTTTGTTAGAGTCCAGTTGAGAGTTTTTAGGCCCAAGTTGTTATCTTTCTGTTGAGAGTA
TCAGGGAAAGGCTTATCCCTTATCTGTTAGTCAGTTGAGACTTGAGAGCTGGGCGCCTCTAATC
TATAAAGAGGACAGTAGATTGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.136255376
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs zma-miR482-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b