Detail information of BGIOSGA034729_circ_g.1


General Information
CircRNA Name BGIOSGA034729_circ_g.1
ID in PlantcircBase osi_circ_008992
Alias Chr11:1485090_1485454(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 1172209-1172573  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA034729
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   AA-AA
Number of exons covered BGIOSGA034729-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCGTGTCTGGAATTATTTCATCATCTTTCTAAAGGAGTTGTATGCAGTGAATTAATTTCAGTG
GAACACAAGAAATTATCAGGCATCGCGAGTTTGTCTggtaagatagtcgttgctttgatcacta
tttgtttcataattatgcactgaaatttagcagaggacagcttttccattacaacattatagtc
tgttagga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAAGATAGTCGTTGCTTTGATCACTATTTGTTTCATAATTATGCACTGAAATTTAGCAGAGG
ACAGCTTTTCCATTACAACATTATAGTCTGTTAGGACATATGCCCTTATTTTTGAAGTAAAACT
GTGGGAGCTGTATGTCTCCTATTTGTAGTACTCAAAGTAGTGGTGTGTGGTACATAAGCATATA
CCCTTTGTAGATCTATCTTCTCTGTTCTTCCTTTTAGTTTTCTTCGTAAGCTTTTACGGAACCT
GTTTATTTGGTCGTGTCTGGAATTATTTCATCATCTTTCTAAAGGAGTTGTATGCAGTGAATTA
ATTTCAGTGGAACACAAGAAATTATCAGGCATCGCGAGTTTGTCT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021