Detail information of Csa3G150240_circ_g.1


General Information
CircRNA Name Csa3G150240_circ_g.1
ID in PlantcircBase csa_circ_001581
Alias Chr3:10244963_10247131
Organism Cucumis sativus
Position chrChr3: 10244963-10247131  JBrowse»
Reference genome Cucumis sativus v1.5
Type   ue-circRNA
Identification method Find_circ
Parent gene Csa3G150240
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Csa3G150240.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAAATGCTGTTTCAAGAAGAACATACAGCCGAAAAAAGAAAAGTGAAAAAACTAATACAGGAA
CTTGAGCAGGCCAGAGATCTCCAGGAGCAACTTGAGtgggaaatggcatcaatggtcgctaagc
cgagttgtcccagtactagtaatcatgggccttcttcgatgactgttcaggaaaaagggagtag
gaataaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGGAAATGGCATCAATGGTCGCTAAGCCGAGTTGTCCCAGTACTAGTAATCATGGGCCTTCTT
CGATGACTGTTCAGGAAAAAGGGAGTAGGAATAAGAGGAAATACAGAGCAGATCCTCCTTTAGG
TGATCTGAATAAGATCACCTCTTCGTCTCAAGATAAATGTCCGAGTTATGAGTTTTCAGCTGAG
AAATTTGAGATTAGTTCAAGTATGGGGCAAAGCAGTGGGTGTGACCTTTGTAGCATTAGTCAAG
AATTTTCTGCTGGATTGAAACTTGATCTTGGATTGTCCAATGGAGGCTCTTCGGACGTTGGGAT
AAACTGGCCAAGAGGGGAATTAGAAGTTGATGAAGATCAAGATGCTGATTGGAGTGACCTTACA
GAAGCTCAGCTCGAAGAACTAGTTTTAATCAATTTGGACACAATATTCAAGGGTGCAATCAAGA
AGATTGTTGCTTCTGGATACACCGAAGAGGTTGCTATAAAGGCTGTCTCAAGGTCTGGCATCTG
TTTTGGTGGTAAAGATACAGTTTCAAATGTAGTGGATAACACCTTAGCTTTTCTTAGACGTGGT
CAAGAAATTGATCATTCCAGGGAACACTATTTTGAAGATTTACAGCAACTAGAAAAATATATTT
TAGCCGAATTAGTTTGTGTTTTACGTGAGATTAGGCCTTTCTTCAGCACTGGCGATGCAATGTG
GTGCTTATTGATTTCTGATATGAGTGTAGCTCTTGCGTGCGCAATGGATAGCGACCCGTGTAAT
GCACTTGTCTGTGATGGTACTTCGAATGAGAGCTCGTCTAACACTATCCCACAGTTAAAAGCAG
AAGTCAAAAGCTCCGAGATGAATCTTCCTAAGCCTGTGAAGCCAATCTCTCCAATCAGTTGTGC
TCATGGTTCCCAATATGATGGACCAGCCACTGTAGGAGTTCCTAGTATTTCAAAACCAAAGGAC
CCATTATTTTCAAGTGGACCATTATCAGAAAAAGAATTACAAAATTCCACCTTTGATGTTGTTG
AGGAATCATTTAGTGTGGCTGTAAACTCTCAAACTTCTGTGTCAGAAGAAAAAATTGAGAGCAG
TAGAAAGGTTCATTCTAATATAACTAAGAGAGAATACATGCTACGACAGAAGTCACTTCATGTG
GATAAAAACTTTCGAACATATGGAGCTAAGGGATCATCAAGAGCCGGAAAGCTGACTGGTTTGG
GGGGTTTAATGTTGGATAAGAAACTAAAGTCTGTTTCAGGCTCCACTGCGGTAAATTTTAAGAA
TGCTTCATTGAAAATAAGCAAGGCTATGGGAATTGATGTGGCCCAAGATAATGGGAGCCATAAT
CTTTCGACCATGGACATTCCTTCTTCTTCTCTACCATTTAACTTGGAAAATATTAATACTGTTT
CTCCTTTTTCCAAGACCAATTTACCATCTTCAATGCCCGCACCTAGTTCACCACCCGCGTTACC
TGCACTTAATACTTCATCTGCGCCACCGACAACCGATATTGATCTTTCTCTTTCTTTGCCTGCT
AAAAGTAATCAACCCTCAGTTCCTTTCAACTGCAATCCTGAATCGTCAACTAGTAGTTTTGTTG
AGAAACCTCAAGAAAAGTTCATTGGACAGTGGTTTCCTAGAGACAAGAAGGACGAGATGGTTTT
GAATCTACTGCCAAGAGTTCAGGAATTACAAAATCAACTGCAGGAGTGGACACAGTGGGCCAAT
CAAAAGGTCATGCAGGCTGCAAGAAGGCTAAGTAAGGACAAGGCCGAACTCAAGGCTTTGAAGC
AAGAAAAAGAGGAAGTTGAACGGCTGAAAAAGGAGAAGCAGACACTAGAGGAAAATACAATGAA
GAAACTCTCTGAGATGGAACATGCATTGTGCAAGGCTAGTGGGCAGGTTGAACTTGCTAACTCT
GCTGTTCGGAGGCTTGAAGTGGAGAATGCTGCATTACGACAGGATATGGAGGTTGCAAAATTAC
GGGCCACAGAATCAGCTGCTAGCTATCAAGAGGTTTCTAAGAGGGAAAAGAAAACACTGATGAA
AGTTCAATCATGGGAGAAGCAGAAAATGCTGTTTCAAGAAGAACATACAGCCGAAAAAAGAAAA
GTGAAAAAACTAATACAGGAACTTGAGCAGGCCAGAGATCTCCAGGAGCAACTTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.133357722
Functional Information
Coding potential Y
Potential coding position 10244970-10247128(+)
Potential amino acid sequence MASMVAKPSCPSTSNHGPSSMTVQEKGSRNKRKYRADPPLGDLNKITSSSQDKCPSYEFSAEKF
EISSSMGQSSGCDLCSISQEFSAGLKLDLGLSNGGSSDVGINWPRGELEVDEDQDADWSDLTEA
QLEELVLINLDTIFKGAIKKIVASGYTEEVAIKAVSRSGICFGGKDTVSNVVDNTLAFLRRGQE
IDHSREHYFEDLQQLEKYILAELVCVLREIRPFFSTGDAMWCLLISDMSVALACAMDSDPCNAL
VCDGTSNESSSNTIPQLKAEVKSSEMNLPKPVKPISPISCAHGSQYDGPATVGVPSISKPKDPL
FSSGPLSEKELQNSTFDVVEESFSVAVNSQTSVSEEKIESSRKVHSNITKREYMLRQKSLHVDK
NFRTYGAKGSSRAGKLTGLGGLMLDKKLKSVSGSTAVNFKNASLKISKAMGIDVAQDNGSHNLS
TMDIPSSSLPFNLENINTVSPFSKTNLPSSMPAPSSPPALPALNTSSAPPTTDIDLSLSLPAKS
NQPSVPFNCNPESSTSSFVEKPQEKFIGQWFPRDKKDEMVLNLLPRVQELQNQLQEWTQWANQK
VMQAARRLSKDKAELKALKQEKEEVERLKKEKQTLEENTMKKLSEMEHALCKASGQVELANSAV
RRLEVENAALRQDMEVAKLRATESAASYQEVSKREKKTLMKVQSWEKQKMLFQEEHTAEKRKVK
KLIQELEQARDLQEQLEWEMASMVAKPSCPSTSNHGPSSMTVQEKGSRNKRKYRADPPLGDLNK
ITSSSQDKCPSYEFSAEKFEISSSMGQSSGCDLCSISQEFSAGLKLDLGLSNGGSSDVGINWPR
GELEVDEDQDADWSDLTEAQLEELVLINLDTIFKGAIKKIVASGYTEEVAIKAVSRSGICFGGK
DTVSNVVDNTLAFLRRGQEIDHSREHYFEDLQQLEKYILAELVCVLREIRPFFSTGDAMWCLLI
SDMSVALACAMDSDPCNALVCDGTSNESSSNTIPQLKAEVKSSEMNLPKPVKPISPISCAHGSQ
YDGPATVGVPSISKPKDPLFSSGPLSEKELQNSTFDVVEESFSVAVNSQTSVSEEKIESSRKVH
SNITKREYMLRQKSLHVDKNFRTYGAKGSSRAGKLTGLGGLMLDKKLKSVSGSTAVNFKNASLK
ISKAMGIDVAQDNGSHNLSTMDIPSSSLPFNLENINTVSPFSKTNLPSSMPAPSSPPALPALNT
SSAPPTTDIDLSLSLPAKSNQPSVPFNCNPESSTSSFVEKPQEKFIGQWFPRDKKDEMVLNLLP
RVQELQNQLQEWTQWANQKVMQAARRLSKDKAELKALKQEKEEVERLKKEKQTLEENTMKKLSE
MEHALCKASGQVELANSAVRRLEVENAALRQDMEVAKLRATESAASYQEVSKREKKTLMKVQSW
EKQKMLFQEEHTAEKRKVKKLIQELEQARDLQEQLEWEMASMVAKPSCPSTSNHGPSSMTVQEK
GSRNKRKYRADPPLGDLNKITSSSQDKCPSYEFSAEKFEISSSMGQSSGCDLCSISQEFSAGLK
LDLGLSNGGSSDVGINWPRGELEVDEDQDADWSDLTEAQLEELVLINLDTIFKGAIKKIVASGY
TEEVAIKAVSRSGICFGGKDTVSNVVDNTLAFLRRGQEIDHSREHYFEDLQQLEKYILAELVCV
LREIRPFFSTGDAMWCLLISDMSVALACAMDSDPCNALVCDGTSNESSSNTIPQLKAEVKSSEM
NLPKPVKPISPISCAHGSQYDGPATVGVPSISKPKDPLFSSGPLSEKELQNSTFDVVEESFSVA
VNSQTSVSEEKIESSRKVHSNITKREYMLRQKSLHVDKNFRTYGAKGSSRAGKLTGLGGLMLDK
KLKSVSGSTAVNFKNASLKISKAMGIDVAQDNGSHNLSTMDIPSSSLPFNLENINTVSPFSKTN
LPSSMPAPSSPPALPALNTSSAPPTTDIDLSLSLPAKSNQPSVPFNCNPESSTSSFVEKPQEKF
IGQWFPRDKKDEMVLNLLPRVQELQNQLQEWTQWANQKVMQAARRLSKDKAELKALKQEKEEVE
RLKKEKQTLEENTMKKLSEMEHALCKASGQVELANSAVRRLEVENAALRQDMEVAKLRATESAA
SYQEVSKREKKTLMKVQSWEKQKMLFQEEHTAEKRKVKKLIQELEQARDLQEQLEWEMASMVAK
PSCPSTSNHGPSSMTVQEKGSRNKRKYRADPPLGDLNKITSSSQDKCPSYEFSAEKFEISSSMG
QSSGCDLCSISQEFSAGLKLDLGLSNGGSSDVGINWPRGELEVDEDQDADWSDLTEAQLEELVL
INLDTIFKGAIKKIVASGYTEEVAIKAVSRSGICFGGKDTVSNVVDNTLAFLRRGQEIDHSREH
YFEDLQQLEKYILAELVCVLREIRPFFSTGDAMWCLLISDMSVALACAMDSDPCNALVCDGTSN
ESSSNTIPQLKAEVKSSEMNLPKPVKPISPISCAHGSQYDGPATVGVPSISKPKDPLFSSGPLS
EKELQNSTFDVVEESFSVAVNSQTSVSEEKIESSRKVHSNITKREYMLRQKSLHVDKNFRTYGA
KGSSRAGKLTGLGGLMLDKKLKSVSGSTAVNFKNASLKISKAMGIDVAQDNGSHNLSTMDIPSS
SLPFNLENINTVSPFSKTNLPSSMPAPSSPPALPALNTSSAPPTTDIDLSLSLPAKSNQPSVPF
NCNPESSTSSFVEKPQEKFIGQWFPRDKKDEMVLNLLPRVQELQNQLQEWTQWANQKVMQAARR
LSKDKAELKALKQEKEEVERLKKEKQTLEENTMKKLSEMEHALCKASGQVELANSAVRRLEVEN
AALRQDMEVAKLRATESAASYQEVSKREKKTLMKVQSWEKQKMLFQEEHTAEKRKVKKLIQELE
QARDLQEQLE
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References He et al., 2020