Detail information of BGIOSGA033480_circ_g.5


General Information
CircRNA Name BGIOSGA033480_circ_g.5
ID in PlantcircBase osi_circ_002978
Alias 10:21694018|21694521
Organism Oryza sativa ssp. indica
Position chr10: 21694018-21694521  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033480
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033480_circ_g.1 BGIOSGA033480_circ_g.2 BGIOSGA033480_circ_g.3 BGIOSGA033480_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA033480-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCAAATCCAGGTGCTAATGCAGATATACATGTCATTCCAAAGATTGAAAGTGCAGATTCAATA
CCAAACCTCCAGTCCATTATTGCTGCTTCAGATGGGgaggaatgatgtcactcgctgtcaagtc
taaaacagctgatacggttaagtgtgaagtagttgatggtggggaactgaaatcaaggcgccac
ctaaatgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGGAATGATGTCACTCGCTGTCAAGTCTAAAACAGCTGATACGGTTAAGTGTGAAGTAGTTGA
TGGTGGGGAACTGAAATCAAGGCGCCACCTAAATGTCCGTGGAAAGAGTGCGACTTTGCCATCT
ATTACAGGTCGGTTGATTTCTCCATAACATGTTCAACCTCTAGATAGTTATGCACAAGATGCTG
ACATCCTTCTGCTTTAACAGAGAAAGATTGGGAGGACATAAAGTTTGGTGTTGAAAATGGTGTT
GATTTCTATGCCGTTTCCTTTGTGAAGGATGCAAAAGTTATTCATGAACTGAAGGACTACCTTA
AAAGTAACCATTTTCTCTGGCACACATGGAATTTCTAATATCTATATCCGGAACTTGATTAATC
TCCTGTGTTCTGTGTTCTTTTCCAAATCCAGGTGCTAATGCAGATATACATGTCATTCCAAAGA
TTGAAAGTGCAGATTCAATACCAAACCTCCAGTCCATTATTGCTGCTTCAGATGGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 21694250-21694504(-)
21694440-21694045(+)
21694024-21694023(+)
Potential amino acid sequence MSSQSFSVIDGKVALFPRTFRWRLDFSSPPSTTSHLTVSAVLDLTASDIIPPHLKQQ*(-)
MQIYMSFQRLKVQIQYQTSSPLLLLQMGRNDVTRCQV*(+)
MMSLAVKSKTADTVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWEDIKFGVENGVDFYAVS
FVKDAKVIHELKDYLKSANADIHVIPKIESADSIPNLQSIIAASDGEE*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021