Detail information of AT2G37420_circ_g.8


General Information
CircRNA Name AT2G37420_circ_g.8
ID in PlantcircBase ath_circ_017064
Alias Ath_circ_FC1543
Organism Arabidpsis thaliana
Position chr2: 15703904-15704475  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene AT2G37420
Parent gene annotation Kinesin-like protein KIN-5B
Parent gene strand +
Alternative splicing AT2G37420_circ_g.3 AT2G37420_circ_g.4 AT2G37420_circ_g.5 AT2G37420_circ_g.6 AT2G37420_circ_g.7
Support reads 1
Tissues aerial
Exon boundary   No-Yes
Splicing signals   GT-AC
Number of exons covered AT2G37420.2:3
AT2G37420.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGGAAGGGCCAATGATTCTAAAACATTGTGGGAGACCACTGAAACAGGCATAAAGAACCTTAA
CACGAAGTATCAACAAGAACTTAATGTCACAATGGAaggaagaggctgaaagagaggagaaaca
agccttaaatgatatcagtctgatattatcaaagttaacttcaaagaaaactgcaatggtgagt
ctttaacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGAAGAGGCTGAAAGAGAGGAGAAACAAGCCTTAAATGATATCAGTCTGATATTATCAAAGTT
AACTTCAAAGAAAACTGCAATGGTGAGTCTTTAACCATTATAACCCCCTTAGGCTTGTTTTATT
CATCAGTTGAATCAAACTTAAAGACTGATGCTCTATGTGTTTCTAGATTTCTGATGCATCAAGC
AATATCCGGGAACATGACATACAGGAAGAGAAGAGATTGTATGAACAAATGTCTGGTATGCAGC
AAGTCTCGATTGGTGCAAAGGAAGAATTGTGTGACTATCTAAAGAAAGAGAAAACTCACTTCAC
GGAAAACACAATAGCTTCAGCTGAGTCTATCACAGTCATGGATAGTTACCTTGAAGATTGGTAT
AAATTCCATCTCCCCACTGCTTTCTATTCAAACCTCTCACTTAATTTGCATTATGTCTTCTCAT
ACAAAGATTGTATTTATTGCAGCTTGGGAAGGGCCAATGATTCTAAAACATTGTGGGAGACCAC
TGAAACAGGCATAAAGAACCTTAACACGAAGTATCAACAAGAACTTAATGTCACAATGGA
Conservation Information
Conserved circRNAs NA
PMCS 0.169165122
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a