Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os05g0405000_circ_g.13 |
ID in PlantcircBase | osa_circ_027843 |
Alias | Os05circ10307 |
Organism | Oryza sativa |
Position | chr5: 19725661-19726310 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, SMALT, Segemehl |
Parent gene | Os05g0405000 |
Parent gene annotation |
Orthophosphate dikinase precursor (EC 2.7.9.1). (Os05t0405000-01 );Similar to Isoform 2 of Pyruvate, phosphate dikinase 1, chloro plastic. (Os05t0405000-02) |
Parent gene strand | - |
Alternative splicing | Os05g0405000_circ_g.5 Os05g0405000_circ_g.6 Os05g0405000_circ_g.7 Os05g0405000_circ_g.8 Os05g0405000_circ_g.9 Os05g0405000_circ_g.10 Os05g0405000_circ_g.11 Os05g0405000_circ_g.12 Os05g0405000_circ_g.14 Os05g0405000_circ_g.15 Os05g0405000_circ_g.16 |
Support reads | 4/2 |
Tissues | leaf/shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os05t0405000-01:3 Os05t0405000-02:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_006239* zma_circ_002368 |
PMCS | 0.45244853 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
19725977-19725691(+) 19726267-19725663(-) |
Potential amino acid sequence |
MYSSTHWSPSTISSHSPAGSVFPAAWYCWHASVDTVNPGGTDSPMLAISAKFAPFPPSRSFMAL LPSLLPLPKWNTLTLPNMSRKRR*(+) MKDLLGGKGANLAEMASIGLSVPPGFTVSTEACQQYQAAGKTLPAGLWEEIVEGLQWVEEYMAA RLGDPARPLLLSVRSGAAVSMPGMMDTVLNLGLNDEVAAGLAAKSGDRFAYDSYRRFLDMFGNV RVFHFGKGKSEGNKAMKDLLGGKGANLAEMASIGLSVPPGFTVSTEACQQYQAAGKTLPAGLWE EIVEGLQWVEEYMAARLGDPARPLLLSVRSGAAVSMPGMMDTVLNLGLNDEVAAGLAAKSGDRF AYDSYRRFLDMFGNVRVFHFGKGKSEGNKAMKDLLGGKGANLAEMASIGLSVPPGFTVSTEACQ QYQAAGKTLPAGLWEEIVEGLQWVEEYMAARLGDPARPLLLSVRSGAAVSMPGMMDTVLNLGLN DEVAAGLAAKSGDRFAYDSYRRFLDMFGNVRVFHFGKGKSEGNKAMKDLLGGKGANLAEMASIG LSVPPGFTVSTEACQQYQAAGKTLPAGLWEEIVEGLQWVEEYMAARLGDPARPLLLSVRSGAAV SMPGMMDTVLNLGLNDEVAAGLAAKSGDRFAYDSYRRFLDMFGNV(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Chu et al., 2017 |