Plant Circular RNA Database

Detail information of Os02g0538900_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0538900_circ_g.1
					
						ID in PlantcircBase
						osa_circ_014931
					
						Alias
						Os_ciR7792
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 19964584-19967169  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os02g0538900						
					
						Parent gene annotation
						
							Basic-leucine zipper (bZIP) transcription factor domain containi
ng protein. (Os02t0538900-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						2/1
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0538900-01:2

General Information
CircRNA Name	Os02g0538900_circ_g.1
ID in PlantcircBase	osa_circ_014931
Alias	Os_ciR7792
Organism	Oryza sativa
Position	chr2: 19964584-19967169 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os02g0538900
Parent gene annotation	Basic-leucine zipper (bZIP) transcription factor domain containi ng protein. (Os02t0538900-01)
Parent gene strand	-
Alternative splicing	NA
Support reads	2/1
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0538900-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GACCGAGACATGGCGAGAGAACACGCTCCCGACGTCTGTTCACCTCTCTTGTGCTACTTAACTA
CAGCCCCTCCAACATCATCTCCTTTATCCCGTTCATctgaagtgagtcaacagttctctcaaga
tcagcaatgtattgaagttttctgacccttgatctttggcctgagcgcctgcacagatgttaac
atgtcatc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGAAGTGAGTCAACAGTTCTCTCAAGATCAGCAATGTATTGAAGTTTTCTGACCCTTGATCTT
TGGCCTGAGCGCCTGCACAGATGTTAACATGTCATCTCGATATTCAGACACATTCTATTGTTCT
TAATATCTAGAGCAGAATTTTCAACAGTTGACGAAATTCAGTTTCATGTATGAAATATGACAAT
AGTACATGAAAAGAATCTACAGAGATAAGATGGTCTTGACTTGGTAGCATCATGCTTCATAGAG
TTAAAAACTTAGTAATGGATTTTCATCAGCAGAAGTGTGGGCATCAAGATGGTCATACTATCAG
CTCCTCAACCACATATATTATCTAAGATCTGTCAGTGTTCCAACAGATACAATGGGATGCCCTT
GGTAACAGGATTCTTGCATAATTCACTTGTCACAGTTAAAAAGCCTTAGTGCGAGAAATAGATC
CTTTTTTTATTCTGAGAACTAGAACCCAATTGATAATCTTTGAAGAATACATATATCACAGTCC
TGATTTCCAGATTTTCTGCAGTGCTGTTTCGATTTCATGACTGCAAGTTCAATGAAAGTTGTCA
CATCATTAACACAAGGGCACTCTTTTAAATGAATTTCTTGTCAGCGTCAATAGCTGACACCGTT
ATCTTTACTAAGCTCAACTAGTGCCACTAAACAAATAAACTGTGAACCAATACCAGACCAAATT
TCTTTAACTTTCTGAAACTTAAAAGACAAACGAAATGAACCACCATATATGAAAAATTTGTGAG
AAATGGTCCAAAAAGAATCCTAAAATAGATCTTTCAAAATCCAGTGCCCGCTTAAATATGAGTG
TTCAATGAGCCCAAAGTAGAGAATTTTGGTCATGCTCCAAATTGAATATTTGTGTAAATAAATA
TTATACCAACAAGTTCACATAAAATTAAAGGGCATGGCTAGTCACGTCATATGCCAAATGCCTC
CTCCCTGATGCTCATCACCGACCGCTACTCCTCTCATCCCAATGTCCCTCAAAACCTCCACCCC
ATGCTCCTTCCAGTAACAGCCCACCATCCAGCCTCACTCACGACTTCAGGTATAGGTGTCAAGC
TCTCATCCCCATTTCTTTGCTTCACCTCCTGCAGTACAGCACCACCCTCACCATCCTCCCACTG
CCTCTTAGCCCCACCCAACCTAACTCCATGAGATTCCCTTCGTGCCACTTTCTTCCTGATGTTC
AGTGGCTAAGTTCTCCACTCTCCACATCCTGCCCAATAACTGCTTCACTGTCATTGTCACTTCT
TGTGACCAGCAGCACCTCACTGCCTCGCCCTCACTCTCCTCCCATGGCCCCCTAACCACACCCA
ACCTAACTCCAGCGAGCTTTGTCCGCAACACTACCCATCTTCCTCATATCCGGGTGGCAATAGC
CACCAATTGCTCCCCCCCCCCCTTTTACTCCAGAATGACAGGGAGCTCCCCCACCCCCCACCCA
CATTGAACTTAACAAGGCCACAGGAGGCAGAGGTTGCATATACCCAATGTGCTATAGACTAAGC
CAAAAATATCTTATATCTGGAGTTGTTACTGCTGAATAGCTGATGATAGAAACCTTAAATTGTT
AGTGGCAAAGACAAAAGGCAAACAGAAGTCACTAAGATTAGCGTTCAAGCTTAACCCTCCACTG
CAGAATGCTATAATATATCAGATATACTGGTACATCGCGTCAGCATTTGCCAAAACAGCCAACT
GTACTGATTCTCTTTGATATAATACTACCTAGCAATACATTCTTTTCACCTGGACTCCCACTTA
TATATATGAAATAGTGAGAGCATATTACATTGGTTACTGTTGAATTTTGATTTCAGGGAATTGA
TTTGAAAAGACTTGGAATCACAAACGCTATGAACAATGCACGGCAGAGAATCATAAATATAAAG
CGGTGTACCTTTTAAGTGACTTCTCTTGATCAGCGTGGCATACAGCATCACCTGTGTCTCCAGT
TCCATTGGCTGCACCAACATTACAGTTCACACCACTTGTGGCATCAATCATCAGGTACTGCAAT
GGGTTGCTAGGGACATTCTCCAAGACAGCGTTAACCATGGAACTCTCTGAACTGGTCAGCCTAG
TCTTCTGTCTCGGCGAATTTGGTCCATAAACACAGCTACCTTCGATGCCAGCACCACTTCCACC
CCCTTCAGCCGCAGCATTGAACGACTCCCCAGCTTCGCCAACCGGCTGCGGATCCCCTTCATCG
ATAGGGTAGATTGGGCTCTGGAACGACGTCAGCACATCCAAGATAGCATCAGAATCGCTGCAGG
CTCTCCTGAGAGGAGGAAGGGTGTGGCTCTTCCCGGAGTCCGCGAGGAGATCATCGAGCCAGCA
CGGCGGCTCACCGACGAATGGATCCTCCGACGGAAACCTGCAGCTCTGCGTGAACAAGCTGTCG
TCCCTCCTTGTGATCTGAGGACCCAGCGGCGGGCAGCGGGGAGGGAGGTGCGGCGACCGAGACA
TGGCGAGAGAACACGCTCCCGACGTCTGTTCACCTCTCTTGTGCTACTTAACTACAGCCCCTCC
AACATCATCTCCTTTATCCCGTTCAT
						
					

			
		

Sequences
Splice junction sequence	GACCGAGACATGGCGAGAGAACACGCTCCCGACGTCTGTTCACCTCTCTTGTGCTACTTAACTA CAGCCCCTCCAACATCATCTCCTTTATCCCGTTCATctgaagtgagtcaacagttctctcaaga tcagcaatgtattgaagttttctgacccttgatctttggcctgagcgcctgcacagatgttaac atgtcatc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGAAGTGAGTCAACAGTTCTCTCAAGATCAGCAATGTATTGAAGTTTTCTGACCCTTGATCTT TGGCCTGAGCGCCTGCACAGATGTTAACATGTCATCTCGATATTCAGACACATTCTATTGTTCT TAATATCTAGAGCAGAATTTTCAACAGTTGACGAAATTCAGTTTCATGTATGAAATATGACAAT AGTACATGAAAAGAATCTACAGAGATAAGATGGTCTTGACTTGGTAGCATCATGCTTCATAGAG TTAAAAACTTAGTAATGGATTTTCATCAGCAGAAGTGTGGGCATCAAGATGGTCATACTATCAG CTCCTCAACCACATATATTATCTAAGATCTGTCAGTGTTCCAACAGATACAATGGGATGCCCTT GGTAACAGGATTCTTGCATAATTCACTTGTCACAGTTAAAAAGCCTTAGTGCGAGAAATAGATC CTTTTTTTATTCTGAGAACTAGAACCCAATTGATAATCTTTGAAGAATACATATATCACAGTCC TGATTTCCAGATTTTCTGCAGTGCTGTTTCGATTTCATGACTGCAAGTTCAATGAAAGTTGTCA CATCATTAACACAAGGGCACTCTTTTAAATGAATTTCTTGTCAGCGTCAATAGCTGACACCGTT ATCTTTACTAAGCTCAACTAGTGCCACTAAACAAATAAACTGTGAACCAATACCAGACCAAATT TCTTTAACTTTCTGAAACTTAAAAGACAAACGAAATGAACCACCATATATGAAAAATTTGTGAG AAATGGTCCAAAAAGAATCCTAAAATAGATCTTTCAAAATCCAGTGCCCGCTTAAATATGAGTG TTCAATGAGCCCAAAGTAGAGAATTTTGGTCATGCTCCAAATTGAATATTTGTGTAAATAAATA TTATACCAACAAGTTCACATAAAATTAAAGGGCATGGCTAGTCACGTCATATGCCAAATGCCTC CTCCCTGATGCTCATCACCGACCGCTACTCCTCTCATCCCAATGTCCCTCAAAACCTCCACCCC ATGCTCCTTCCAGTAACAGCCCACCATCCAGCCTCACTCACGACTTCAGGTATAGGTGTCAAGC TCTCATCCCCATTTCTTTGCTTCACCTCCTGCAGTACAGCACCACCCTCACCATCCTCCCACTG CCTCTTAGCCCCACCCAACCTAACTCCATGAGATTCCCTTCGTGCCACTTTCTTCCTGATGTTC AGTGGCTAAGTTCTCCACTCTCCACATCCTGCCCAATAACTGCTTCACTGTCATTGTCACTTCT TGTGACCAGCAGCACCTCACTGCCTCGCCCTCACTCTCCTCCCATGGCCCCCTAACCACACCCA ACCTAACTCCAGCGAGCTTTGTCCGCAACACTACCCATCTTCCTCATATCCGGGTGGCAATAGC CACCAATTGCTCCCCCCCCCCCTTTTACTCCAGAATGACAGGGAGCTCCCCCACCCCCCACCCA CATTGAACTTAACAAGGCCACAGGAGGCAGAGGTTGCATATACCCAATGTGCTATAGACTAAGC CAAAAATATCTTATATCTGGAGTTGTTACTGCTGAATAGCTGATGATAGAAACCTTAAATTGTT AGTGGCAAAGACAAAAGGCAAACAGAAGTCACTAAGATTAGCGTTCAAGCTTAACCCTCCACTG CAGAATGCTATAATATATCAGATATACTGGTACATCGCGTCAGCATTTGCCAAAACAGCCAACT GTACTGATTCTCTTTGATATAATACTACCTAGCAATACATTCTTTTCACCTGGACTCCCACTTA TATATATGAAATAGTGAGAGCATATTACATTGGTTACTGTTGAATTTTGATTTCAGGGAATTGA TTTGAAAAGACTTGGAATCACAAACGCTATGAACAATGCACGGCAGAGAATCATAAATATAAAG CGGTGTACCTTTTAAGTGACTTCTCTTGATCAGCGTGGCATACAGCATCACCTGTGTCTCCAGT TCCATTGGCTGCACCAACATTACAGTTCACACCACTTGTGGCATCAATCATCAGGTACTGCAAT GGGTTGCTAGGGACATTCTCCAAGACAGCGTTAACCATGGAACTCTCTGAACTGGTCAGCCTAG TCTTCTGTCTCGGCGAATTTGGTCCATAAACACAGCTACCTTCGATGCCAGCACCACTTCCACC CCCTTCAGCCGCAGCATTGAACGACTCCCCAGCTTCGCCAACCGGCTGCGGATCCCCTTCATCG ATAGGGTAGATTGGGCTCTGGAACGACGTCAGCACATCCAAGATAGCATCAGAATCGCTGCAGG CTCTCCTGAGAGGAGGAAGGGTGTGGCTCTTCCCGGAGTCCGCGAGGAGATCATCGAGCCAGCA CGGCGGCTCACCGACGAATGGATCCTCCGACGGAAACCTGCAGCTCTGCGTGAACAAGCTGTCG TCCCTCCTTGTGATCTGAGGACCCAGCGGCGGGCAGCGGGGAGGGAGGTGCGGCGACCGAGACA TGGCGAGAGAACACGCTCCCGACGTCTGTTCACCTCTCTTGTGCTACTTAACTACAGCCCCTCC AACATCATCTCCTTTATCCCGTTCAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.120712523

Conservation Information
Conserved circRNAs	NA
PMCS	0.120712523

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							19967080-19964633(+)
19966589-19967168(-)
19967082-19967133(-)
						
						Potential amino acid sequence
						
							MAREHAPDVCSPLLCYLTTAPPTSSPLSRSSEVSQQFSQDQQCIEVF*(+)
MLVQPMELETQVMLYATLIKRSHLKGAQAKDQGSENFNTLLILRELLTHFR*(-)
MSRSPHLPPRCPPLGPQITRRDDSLFTQSCRFPSEDPFVGEPPCWLDDLLADSGKSHTLPPLRR
ACSDSDAILDVLTSFQSPIYPIDEGDPQPVGEAGESFNAAAEGGGSGAGIEGSCVYGPNSPRQK
TRLTSSESSMVNAVLENVPSNPLQYLMIDATSGVNCNVGAANGTGDTGDAVCHADQEKSLKRRS
GQRSRVRKLQYIADLERTVDSLQMNGIKEMMLEGL*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	19967080-19964633(+) 19966589-19967168(-) 19967082-19967133(-)
Potential amino acid sequence	MAREHAPDVCSPLLCYLTTAPPTSSPLSRSSEVSQQFSQDQQCIEVF(+) MLVQPMELETQVMLYATLIKRSHLKGAQAKDQGSENFNTLLILRELLTHFR(-) MSRSPHLPPRCPPLGPQITRRDDSLFTQSCRFPSEDPFVGEPPCWLDDLLADSGKSHTLPPLRR ACSDSDAILDVLTSFQSPIYPIDEGDPQPVGEAGESFNAAAEGGGSGAGIEGSCVYGPNSPRQK TRLTSSESSMVNAVLENVPSNPLQYLMIDATSGVNCNVGAANGTGDTGDAVCHADQEKSLKRRS GQRSRVRKLQYIADLERTVDSLQMNGIKEMMLEGL*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0538900_circ_g.1

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