Plant Circular RNA Database

Detail information of Os03g0327600_circ_g.6

			
						 General Information
					
						CircRNA Name
						Os03g0327600_circ_g.6
					
						ID in PlantcircBase
						osa_circ_019599
					
						Alias
						Os_ciR2938
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 11958567-11959073  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder, find_circ
					
						Parent gene
						
							Os03g0327600						
					
						Parent gene annotation
						
							Ricin B-related lectin domain containing protein. (Os03t0327600-
01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os03g0327600_circ_g.1 Os03g0327600_circ_g.2 Os03g0327600_circ_g.3 Os03g0327600_circ_g.4 Os03g0327600_circ_g.5 Os03g0327600_circ_g.7 						
					
						Support reads
						4/619
					
						Tissues
						root/root, seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0327600-01:1

General Information
CircRNA Name	Os03g0327600_circ_g.6
ID in PlantcircBase	osa_circ_019599
Alias	Os_ciR2938
Organism	Oryza sativa
Position	chr3: 11958567-11959073 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, PcircRNA_finder, find_circ
Parent gene	Os03g0327600
Parent gene annotation	Ricin B-related lectin domain containing protein. (Os03t0327600- 01)
Parent gene strand	-
Alternative splicing	Os03g0327600_circ_g.1 Os03g0327600_circ_g.2 Os03g0327600_circ_g.3 Os03g0327600_circ_g.4 Os03g0327600_circ_g.5 Os03g0327600_circ_g.7
Support reads	4/619
Tissues	root/root, seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0327600-01:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TCAGCATGCGGATGCAGCGGAAGCTCTTGCCCACGTCGCCGCTCTCCGTCCACAGCACCGACTC
GTCCGGGTACTCCGGGTTGAACGGCGCCAGCTTCACagggtggccttcgccttgggagtgcttg
atggcctcgccggtgaccctgttgacgagggcgaaggcggggtagccttcctcgtccttgatgc
tgttgctg

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							AGGGTGGCCTTCGCCTTGGGAGTGCTTGATGGCCTCGCCGGTGACCCTGTTGACGAGGGCGAAG
GCGGGGTAGCCTTCCTCGTCCTTGATGCTGTTGCTGTGCCTCATGTCCTTGATCCAGTGCTGGT
ACTCGTCGCGAGGGTTGGTGGGGGCGAGGCAGACGGAGCCGCCGCGGACGGTGACGCTGAAGCC
CTCGTCGGCCTTGCAGAAGATGCGGACGGTGGGCTCGTTGCCGCCGCGGGGTGCGTTGGCGCTG
CCGCCGGCGTAGGCCTCGTCGCCCCAGGGGAGGATCTTCCAGCACTGGTTGTCGCCCTTGGCCC
ACTCCCAGAGCACGATGGTGGTGCCGTCGTGCACGCCGCCGTGGTCCTTGTCGCCGTGGAACGC
GTCGAAGTTGAGGCGGATGTTGTTCAGCATGCGGATGCAGCGGAAGCTCTTGCCCACGTCGCCG
CTCTCCGTCCACAGCACCGACTCGTCCGGGTACTCCGGGTTGAACGGCGCCAGCTTCAC

Sequences
Splice junction sequence	TCAGCATGCGGATGCAGCGGAAGCTCTTGCCCACGTCGCCGCTCTCCGTCCACAGCACCGACTC GTCCGGGTACTCCGGGTTGAACGGCGCCAGCTTCACagggtggccttcgccttgggagtgcttg atggcctcgccggtgaccctgttgacgagggcgaaggcggggtagccttcctcgtccttgatgc tgttgctg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AGGGTGGCCTTCGCCTTGGGAGTGCTTGATGGCCTCGCCGGTGACCCTGTTGACGAGGGCGAAG GCGGGGTAGCCTTCCTCGTCCTTGATGCTGTTGCTGTGCCTCATGTCCTTGATCCAGTGCTGGT ACTCGTCGCGAGGGTTGGTGGGGGCGAGGCAGACGGAGCCGCCGCGGACGGTGACGCTGAAGCC CTCGTCGGCCTTGCAGAAGATGCGGACGGTGGGCTCGTTGCCGCCGCGGGGTGCGTTGGCGCTG CCGCCGGCGTAGGCCTCGTCGCCCCAGGGGAGGATCTTCCAGCACTGGTTGTCGCCCTTGGCCC ACTCCCAGAGCACGATGGTGGTGCCGTCGTGCACGCCGCCGTGGTCCTTGTCGCCGTGGAACGC GTCGAAGTTGAGGCGGATGTTGTTCAGCATGCGGATGCAGCGGAAGCTCTTGCCCACGTCGCCG CTCTCCGTCCACAGCACCGACTCGTCCGGGTACTCCGGGTTGAACGGCGCCAGCTTCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_012954 						
					
						PMCS
						0.716736029

Conservation Information
Conserved circRNAs	osi_circ_012954
PMCS	0.716736029

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							11958902-11958636(+)
11958982-11958569(-)
						
						Potential amino acid sequence
						
							MVVPSCTPPWSLSPWNASKLRRMLFSMRMQRKLLPTSPLSVHSTDSSGYSGLNGASFTGWPSPW
ECLMASPVTLLTRAKAG*(+)
MLNNIRLNFDAFHGDKDHGGVHDGTTIVLWEWAKGDNQCWKILPWGDEAYAGGSANAPRGGNEP
TVRIFCKADEGFSVTVRGGSVCLAPTNPRDEYQHWIKDMRHSNSIKDEEGYPAFALVNRVTGEA
IKHSQGEGHPVKLAPFNPEYPDESVLWTESGDVGKSFRCIRMLNNIRLNFDAFHGDKDHGGVHD
GTTIVLWEWAKGDNQCWKILPWGDEAYAGGSANAPRGGNEPTVRIFCKADEGFSVTVRGGSVCL
APTNPRDEYQHWIKDMRHSNSIKDEEGYPAFALVNRVTGEAIKHSQGEGHPVKLAPFNPEYPDE
SVLWTESGDVGKSFRCIRMLNNIRLNFDAFHGDKDHGGVHDGTTIVLWEWAKGDNQCWKILPWG
DEAYAGGSANAPRGGNEPTVRIFCKADEGFSVTVRGGSVCLAPTNPRDEYQHWIKDMRHSNSIK
DEEGYPAFALVNRVTGEAIKHSQGEGHPVKLAPFNPEYPDESVLWTESGDVGKSFRCIRMLNNI
RLNFDAFHGDKDHGGVHDGTTIVLWEWAKGDNQCWKILPWGDEAYAGGSANAPRGGNEPTVRIF
CKADEGFSVTVRGGSVCLAPTNPRDEYQHWIKDMRHSNSIKDEEGYPAFALVNRVTGEAIKHSQ
GEGHP(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	11958902-11958636(+) 11958982-11958569(-)
Potential amino acid sequence	MVVPSCTPPWSLSPWNASKLRRMLFSMRMQRKLLPTSPLSVHSTDSSGYSGLNGASFTGWPSPW ECLMASPVTLLTRAKAG*(+) MLNNIRLNFDAFHGDKDHGGVHDGTTIVLWEWAKGDNQCWKILPWGDEAYAGGSANAPRGGNEP TVRIFCKADEGFSVTVRGGSVCLAPTNPRDEYQHWIKDMRHSNSIKDEEGYPAFALVNRVTGEA IKHSQGEGHPVKLAPFNPEYPDESVLWTESGDVGKSFRCIRMLNNIRLNFDAFHGDKDHGGVHD GTTIVLWEWAKGDNQCWKILPWGDEAYAGGSANAPRGGNEPTVRIFCKADEGFSVTVRGGSVCL APTNPRDEYQHWIKDMRHSNSIKDEEGYPAFALVNRVTGEAIKHSQGEGHPVKLAPFNPEYPDE SVLWTESGDVGKSFRCIRMLNNIRLNFDAFHGDKDHGGVHDGTTIVLWEWAKGDNQCWKILPWG DEAYAGGSANAPRGGNEPTVRIFCKADEGFSVTVRGGSVCLAPTNPRDEYQHWIKDMRHSNSIK DEEGYPAFALVNRVTGEAIKHSQGEGHPVKLAPFNPEYPDESVLWTESGDVGKSFRCIRMLNNI RLNFDAFHGDKDHGGVHDGTTIVLWEWAKGDNQCWKILPWGDEAYAGGSANAPRGGNEPTVRIF CKADEGFSVTVRGGSVCLAPTNPRDEYQHWIKDMRHSNSIKDEEGYPAFALVNRVTGEAIKHSQ GEGHP(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os03g0327600_circ_g.6

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