Detail information of BGIOSGA009426_circ_g.3


General Information
CircRNA Name BGIOSGA009426_circ_g.3
ID in PlantcircBase osi_circ_005273
Alias 3:40304948|40305180
Organism Oryza sativa ssp. indica
Position chr3: 40304948-40305180  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA009426
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA009426_circ_igg.1 BGIOSGA009426_circ_g.1 BGIOSGA009426_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA009426-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGGGGAACAATGGGTAGATTTCAGTTAGAAGAAAAAATATCACCTTGACACTAACTTGTCAAG
AAACCCCCTTTTCTCATCTATCCACACCCCATCACGttgtttatcgtcattttagtgctactgt
tattgaaggagttggtagtcagaagtcagaagagaagtctatagataaataaaagggatagtgg
aacttcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGTTTATCGTCATTTTAGTGCTACTGTTATTGAAGGAGTTGGTAGTCAGAAGTCAGAAGAGAA
GTCTATAGATAAATAAAAGGGATAGTGGAACTTCATCTAATTTCAAGAATGACTTAGTGAAAAT
ACCACATGGGGAACAATGGGTAGATTTCAGTTAGAAGAAAAAATATCACCTTGACACTAACTTG
TCAAGAAACCCCCTTTTCTCATCTATCCACACCCCATCACG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021