Detail information of Chr2_circ_ig.66


General Information
CircRNA Name Chr2_circ_ig.66
ID in PlantcircBase csa_circ_001248
Alias Chr2:20330158_20334628
Organism Cucumis sativus
Position chrChr2: 20330158-20334628  JBrowse»
Reference genome Cucumis sativus v1.5
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Chr2_circ_ig.67 Chr2_circ_ig.68
Support reads NA
Tissues leaf,root
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGCAAACTCAAGTGATGGGTGTCATGAAGCAAGAGCAACCTGAAAGATACCTGCGACTTGAG
CATTTATTAGTCCGAACATACTTTGATCCGAACGAGtgtcatcaagatcgtgcttcagttttgt
aaagaaaattcactgcaccaaacgttccagacgctacagaacgagtgtcaggtttctttgaata
ctgtagac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTCATCAAGATCGTGCTTCAGTTTTGTAAAGAAAATTCACTGCACCAAACGTTCCAGACGCTA
CAGAACGAGTGTCAGGTTTCTTTGAATACTGTAGACAGCATTGAAACTTTTGTTGCTGATATAA
ACTCTGGACGGTGGGATGCTATATTGCCTCAAGTATCTCAACTTAAGCTTCCAAGAAATAAATT
AGAGGACTTGTATGAACAGGTAAAGTTAAACAGACTAATATTTTATACTTTAGGACAAAATGGT
GCATTTTGCTTTTGGAAGAAAATTTGTACTCGATGAATGGCAGAAAGATTTTACGGTGTAGATA
ATTTGACTATCCTTAAGCATGTAGTCCCCTAGTGGGTTGGGGTTGGAAACATAGATGGAGGGGT
TGACAAATGGCTTTGTGGCAACATTATAGATGAGCATGGGATTCTAGAAATGTCTGGAACTCAA
AATTTGAAGAAAGAGGACTCTATGGTAGCATTTATTTAATTATTTCATTTCACATTTTACTTTT
ATAAGAAACCCGTATATATAGTTGCATTTTGAATATTAAGTTCATCTGGGTTTGGGATAACATC
ATCTGCTATACTATTCAACAAGTTCTCTTGTTGGCACAATTAAGATTTATCTTCTATTTGATTG
TTTTTATTAATTATTTTTGTAAGAAACGAAGACGATTCACTTTTGGCAAGAGCTTGTGAGTCTT
CACTCTTCTGGGGTTTTCTTTTTGCTGGTACATTATTTATTCTTTTTGTCAAAATGAAGGTTGG
AGAAGTCAACCAACTACCAAGAGAAACTTTCCTTGGAACTGTCAAAAGGGAAATTCCCAACATA
CTAATATCTTTGTTTGGACTGCTTGTTTTCATTGCCTCAATAGGTCAGGAAGGTTAGAGCCTTA
AGTCCTTCCTGTTTTCCTCTTTGTTTTTAGAAAAAGTTTATTTCATCGGATTTCGATAATACAT
TCACAGTGTGAGTTCCATTTTGTTTTCCTTGTACATTGCCTGTTTTATAGCTATCCTCCTTAAT
TTGAAACAAGAACACCGTCGACGGCAAAATGTACAAAAAAATAAAATTACGGAGAAGGAGATTG
TTGCCAGGATTGATGAGATTGCTGCTCTTGAATCGGATGGCCTCCTTAACATCGGTCTCATTGA
GGAGAGGTTTAATTTAAAAAGGAACCTTGAGGAGGTGATTTAGAAAGGATAATGTGAGTTGGTA
TCGAAAGTGTAAAATCAAGTGGGCCAGGGTAGGAGATTGTAACTCGGGTTTCTTCCATAGAATG
GCTAATGGAAGAAGGAAGAAGAATCATATTGGTCTTTTAGTTTTAGACAATGGGGTTTGTACTA
GAGATAGGATGGAATTGAGGAGGAGATCTTAAATTCTTTCTCTAACCTCTATAGTTTTGCCCCC
CCTCCTCCTCCCGCTCTTTTGCTCGTTAGGCTTCTTTACTACACTCAATGTATAACTCTCTTGT
ACTTTGAGTTATATTCTTAATAAAAAAGTTTGTCTCTGTTTAAAAAAAAAAATCTCTATAGTCA
TGGGGTGTTGATTAAGTCGTTTGTGGAGGGCATAAGCTGGAGTCCTATATCAACAAGGGAGGAT
GAGGAATTAGTGGCTCCTTCTCGTTAGAGGAGATTGAAAATGTTGTTTTTAGTTATGATGGTAA
CAAGTCTCTTGGCGCAGATGTGTTCTTTAAGGAGAATTAGAATCTTATCAGAGGAGACTTGGAG
TGGGTTCAAGGAATTCTTCATAAGAAGGATTTTGAACAGTTTGTTGATTGAAACCTTAATATGC
TTGATTCCTAAAAAGGAAAACGCGAATAGGGTGAAGGAGTTTTGGCCTATTAGCCTCATTACTT
GCGTCTACAAGGTAAGCTCTTGCTAATCGTTTAAGGAAAGTGCTCTCGTCGACAGTTTCTGATT
CTCAGGGGGCCTTTTTGACTGGAAGGCAGTTTCTAGACCAAGCTTTGATAGCTAATGAAGCTAT
TGAGGAGTCTAGATTGAAGAATTTGGAAGGGTTCTGTTAAAACTTGACTTTGAGAAAGCGTACG
TCCATGTGGATTGGGATTTTTTGGAAGACTTCGGTTACAAATGGAGAATGTGGGTGTGGGGTGT
GTTCAAAATGTCAAGTATTTCATTCTCATCAATGAGCCCAAAAGGATCGATTCAAGCTTCTAAG
GGTCTAAGACAAGGGGATCCACTGTTCCCGTTTCTGTTTTTACTTGTGGTGGATGTCTTAAGTC
GGATGTCAACAAAGGGGTCGAGGGAAACATTATTGAGCCTTTTAAGATTGGTAGAGATGGAGTG
GTCTTATTGCACCTTCAATTTGCCGATGATCCAATGTTATTTTGTTTCAGAAAAGAGGAGTCTT
TCCACACTCTCAATCATATGGTTGAGTTCTTTGAAGAGATGGTGGGGCTGAAAATCAATAGAAG
CAAGTGCACTATTTATGGTATTAATTCTGATCAAGCTAAGATTTAGAGGCAGGCTAAGGTTTTT
GATTGTGAGGTGGGTTCTTTCCCATCTTCTTACCTTGGGCTTTCTTTAGGGGGTAATTTGAGAT
TTGTGTCCTTTTGGAACCCAACATGTGACAAAATTTGCAAGAGATTGGAAGTGTGGAAGAAAGG
GTTCTTCTTGAAAGCTGGCAGATTAACTTTGATTAAATCTGTGTTAAGTGGTATCTTGGTGTAT
TATCTTTTGTGGTTTAAGTCTCCTAGCTTGGTGTGTAAGAGTATTGAAAAGTACATGAGAGATT
TCCCGTGGGAGGGGGTGGGGGAGGGTCATGGCTCCCATCTGGTTAATTGGGAGTTGGTGGGGCA
ACCCATGAGTAAGGGGGGATTAGGGATTGGTAACCTTATAATCCGTAACATATCTTTGTTGGCA
AAGTGGCTTTGGTGCTTCTATCTTTAATCTGATTCTCTTTGGCATAGGATTATTGTGAGCAAGC
ATGGTCCCCATCCTTTTGAGCGGACGTCGTTAGGTGTTAAAGGCACTTTTTGAAATCCTTGGAA
GGATATTTCTTTAGAGCTCCCTTCTTTTTCTCGATTTTCTTGCTGTTTAGTGGGGGATGGTAAG
GACACTTACTTTTGGTAGGACCAGTGGGTGGGGGAGAATTCCCTTTGTTTGATATTTCTGCATC
TATTTCATTTATCTTCTTCCAAAAATTGTACTATCTCGGACCTTTTGGTGAGATGTGAGAATTC
CATGTCTTTCTCTTTCGAGTTTCGTTGTAATTTGACCAATAGGTAAACGATAGAGGTGGCTTCT
CTTCTTTTCTTGCTTGAGGGGTGCTCTGGGAGAAGGGATGTTCGTGTTTGGAATCCTAATCCTA
GTTGGGTTTCTCCTATAAGTCTATGTTTAGTCTGTTGTTGGATCCTGCTCCCCCTAAAGCGTCG
GTTTTTGATTTGGTGTGGAGGAAAAAGGTTCCTAAGAAAGTTAGGCTCTTTATCTAACAAGTCT
TGCTTGGTGAAGTTAATACTGTTGATAGGCTTGTTAGGAGAACTCCGCTTGTCGGGCCTTTTTG
TTGCATATTGTATTAGAAGGTGGAGGAAGATCTTGATATTGCTTGTTGGGATTGCTAGTTTGCA
AGGGCCGTGTGGTGCTCCTTCCTTCAGGAGTTTGGTGTTAGCTTTGCTGGTTTCTAGAGCGTCA
AAGCGATGATCTAGGAGTTCCTCCTCCATCTGCTTTTCAAAGATAAAAGGGGTTTTTTATGGCT
TGTAGGGATGTGTGCAGTTATTTGGGACATATAGCGTGAGAGCAATGATAGGGTGTTCAGGGGT
AAAGAGAGGGGTCTTACTGAGATTTGGTACTTGGTTAGATTTCATGTGTCTCTTTGGGCTTCAA
TTTCGAAGAACTTTTGTAACTATTCCTTAGGCAGTATTTTACTTAGTTGGTCCCCTTTTTTTGT
AAGTGGGGTGGTTTTGGTGAGCAAGTTTTTTTTGTATGCCCTTGTATTCTTTCATTTTTTTCTC
AATGAAAGTTGTTTTCATAAAAATTACGAAGACAAGTGTCAGAGGAATGAGTTTCAGCTAGTTG
ATAGACAAGAAGAAAAGAACGAAATCTCGAATTCCGCATTCTAAAATCACTAGTATATTGCCTC
CTTTCCTCCATTTCACAACCTTTTTCTTCATAAGCTTGGTGATAAAGTCTTTTTTTTTTTTTAT
AACAAACGGAGATAAAGTCTTAAACACTTTAAACTTTGGTTAGAATTGTAGATTATGTATATTT
AATGTTTGATTGCACTTCTCTTAAGAAAGTTCATCAGTTTTGAGAATCTTGACGCATCTCATGA
TTTGAAACTTTCTTGTAATTCTGTTTTCAGATTGTATTAGAAATGATTGAGCTTCGTGAATTGG
ATACGGCTCGTGCTATTCTAAGGCAAACTCAAGTGATGGGTGTCATGAAGCAAGAGCAACCTGA
AAGATACCTGCGACTTGAGCATTTATTAGTCCGAACATACTTTGATCCGAACGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.970636347
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019