Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os02g0115700_circ_g.1 |
ID in PlantcircBase | osa_circ_012722 |
Alias | Os02circ01921 |
Organism | Oryza sativa |
Position | chr2: 825778-827267 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | SMALT, Segemehl |
Parent gene | Os02g0115700 |
Parent gene annotation |
Catalase isozyme A (EC 1.11.1.6) (CAT-A). (Os02t0115700-01);Simi lar to Catalase. (Os02t0115700-02);Similar to Catalase. (Os02t01 15700-03) |
Parent gene strand | - |
Alternative splicing | Os02g0115700_circ_g.2 Os02g0115700_circ_g.3 Os02g0115700_circ_g.4 Os02g0115700_circ_g.5 Os02g0115700_circ_g.6 Os02g0115700_circ_g.7 Os02g0115700_circ_g.8 Os02g0115700_circ_g.9 Os02g0115700_circ_g.10 Os02g0115700_circ_g.11 Os02g0115700_circ_g.12 Os02g0115700_circ_g.13 Os02g0115700_circ_g.14 Os02g0115700_circ_g.15 Os02g0115700_circ_g.16 Os02g0115700_circ_g.17 Os02g0115700_circ_g.18 Os02g0115700_circ_g.19 Os02g0115700_circ_g.20 Os02g0115700_circ_g.21 |
Support reads | 2 |
Tissues | panicle |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os02t0115700-03:1 Os02t0115700-01:2 Os02t0115700-02:1 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.32727198 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
826789-827264(+) 826681-825780(-) |
Potential amino acid sequence |
MGARVGLEGVDDVGELDAVADEEDGEVVAEEVPVALAGVELDGEPARVADRLRAAALVDDGGEA DDDGGLGARGPEEVGAGDVGDVVGALEEALGGGAAGVDHALRDALPGEVRHLLDQVVVLEEDRP PGPHCQRLVVVPHRSSRVRRRRLRVERARRPELGEVVDPDGAELRGDLGVRELAGEAADEPLLS IRRPRPVPLPGLLEVVLLVYRRLLPPPHHGARRDGRRRRVAERRVARWVVVHLLVPVHEVHGAV VVVVVVGALGRVHRQHQVVWPQPVALRVGVREHPALQHLVVGVVDPRHHQPRPERQLLVLVEEV VDVAVENEAPHGPERHLVLRPCLGVIQRVEVEPLLLLRVDHLDEQLPLGEVAGGDGVVEVLGGV AVVLAADERGLVVHQAADAAGGLPVELDVPGLGVAGDEGVGVDAEAVHVAVIGGDADVVEEEEE GVEALGVVGQEVEDPPVLLDMGARVGLEGVDDVGELDAVADEEDGEVVAEEVPVALAGVELDGE PARVADRLRAAALVDDGGEADDDGGLGARGPEEVGAGDVGDVVGALEEALGGGAAGVDHALRDA LPGEVRHLLDQVVVLEEDRPPGPHCQRLVVVPHRSSRVRRRRLRVERARRPELGEVVDPDGAEL RGDLGVRELAGEAADEPLLSIRRPRPVPLPGLLEVVLLVYRRLLPPPHHGARRDGRRRRVAERR VARWVVVHLLVPVHEVHGAVVVVVVVGALGRVHRQHQVVWPQPVALRVGVREHPALQHLVVGVV DPRHHQPRPERQLLVLVEEVVDVAVENEAPHGPERHLVLRPCLGVIQRVEVEPLLLLRVDHLDE QLPLGEVAGGDGVVEVLGGVAVVLAADERGLVVHQAADAAGGLPVELDVPGLGVAGDEGVGVDA EAVHVAVIGGDADVVEEEEEGVEALGVVGQEVEDPPVLLDMGARVGLEGVDDVGELDAVADEED GEVVAEEVPVALAGVELDGEPARVADRLRAAALVDDGGEADDDGGLGARGPEEVGAGDVGDVVG ALEEALGGGAAGVDHALRDALPGEVRHLLDQVVVLEEDRPPGPHCQRLVVVPHRSSRVRRRRLR VERARRPELGEVVDPDGAELRGDLGVRELAGEAADEPLLSIRRPRPVPLPGLLEVVLLVYRRLL PPPHHGARRDGRRRRVAERRVARWVVVHLLVPVHEVHGAVVVVVVVGALGRVHRQHQVVWPQPV ALRVGVREHPALQHLVVGVVDPRHHQPRPERQLLVLVEEVVDVAVENEAPHGPERHLVLRPCLG VIQRVEVEPLLLLRVDHLDEQLPLGEVAGGDGVVEVLGGVAVVLAADERGLVVHQAADAAGGLP VELDVPGLGVAGDEGVGVDAEAVHVAVIGGDADVVEEEEEGVEALGVVGQEVEDPPVLLDMGAR VGLEGVDDVGELDAVADEEDGEVVAEEVPVALAGVELDGEPARVADRLRAAALVDDGGEADDDG GLGARGPEEVGAGDVGDVVGALEEALGGGAAGVDHALRDALPGEVRHLLDQVVVLEEDRPPGPH CQRLVVVPHRSSRVRRRRLRVERARRPE(+) MDGFGVNTYTFVTRDAKARYVKFHWKPTCGVSCLMDDEATLVGGKNHSHATQDLYDSIAAGNFP EWKLFVQVIDPEEEERFDFDPLDDTKTWPEDEVPLRPVGRLVLNRNVDNFFNENEQLAFGPGLV VPGIYYSDDKMLQCRVFAYADTQRYRLGPNYLMLPVNAPKCAHHNNHYDGAMNFMHRDEEVDYY PSRHAPLRHAPPTPITPRPVVGRRQKATIHKQNDFKQPGERYRSWAPDRQERFIRRFAGELAHP KVSPELRAIWVNYLSQFRPSSSFDTKTTTTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAH FARERIPERVVHARGASAKGFFECTHDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIR DPRGFAVKFYTREGNWDLLGNNFPVFFIRDGIKFPDVIHAFKPNPRSHVQEYWRVFDFLSHHPE SLHTFFFLFDDVGIPTDYRHMDGFGVNTYTFVTRDAKARYVKFHWKPTCGVSCLMDDEATLVGG KNHSHATQDLYDSIAAGNFPEWKLFVQVIDPEEEERFDFDPLDDTKTWPEDEVPLRPVGRLVLN RNVDNFFNENEQLAFGPGLVVPGIYYSDDKMLQCRVFAYADTQRYRLGPNYLMLPVNAPKCAHH NNHYDGAMNFMHRDEEVDYYPSRHAPLRHAPPTPITPRPVVGRRQKATIHKQNDFKQPGERYRS WAPDRQERFIRRFAGELAHPKVSPELRAIWVNYLSQFRPSSSFDTKTTTTNAGAPVWNDNEALT VGPRGPILLEDYHLIEKVAHFARERIPERVVHARGASAKGFFECTHDVTDITCADFLRSPGAQT PVIVRFSTVIHERGSPETIRDPRGFAVKFYTREGNWDLLGNNFPVFFIRDGIKFPDVIHAFKPN PRSHVQEYWRVFDFLSHHPESLHTFFFLFDDVGIPTDYRHMDGFGVNTYTFVTRDAKARYVKFH WKPTCGVSCLMDDEATLVGGKNHSHATQDLYDSIAAGNFPEWKLFVQVIDPEEEERFDFDPLDD TKTWPEDEVPLRPVGRLVLNRNVDNFFNENEQLAFGPGLVVPGIYYSDDKMLQCRVFAYADTQR YRLGPNYLMLPVNAPKCAHHNNHYDGAMNFMHRDEEVDYYPSRHAPLRHAPPTPITPRPVVGRR QKATIHKQNDFKQPGERYRSWAPDRQERFIRRFAGELAHPKVSPELRAIWVNYLSQFRPSSSFD TKTTTTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFARERIPERVVHARGASAKGFFEC THDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRDPRGFAVKFYTREGNWDLLGNNFP VFFIRDGIKFPDVIHAFKPNPRSHVQEYWRVFDFLSHHPESLHTFFFLFDDVGIPTDYRHMDGF GVNTYTFVTRDAKARYVKFHWKPTCGVSCLMDDEATLVGGKNHSHATQDLYDSIAAGNFPEWKL FVQVIDPEEEERFDFDPLDDTKTWPEDEVPLRPVGRLVLNRNVDNFFNENEQLAFGPGLVVPGI YYSDDKMLQCRVFAYADTQRYRLGPNYLMLPVNAPKCAHHNNHYDGAMNFMHRDEEVDYYPSRH APLRHAPPTPITPRPVVGRRQKATIHKQNDFKQPGERYRSWAPDRQERFIRRFAGELAHPKVSP ELRAIWVNYLSQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Lu et al., 2015 |