Detail information of BGIOSGA033172_circ_g.6


General Information
CircRNA Name BGIOSGA033172_circ_g.6
ID in PlantcircBase osi_circ_002869
Alias 10:17415329|17416245
Organism Oryza sativa ssp. indica
Position chr10: 17415329-17416245  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033172
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033172_circ_g.4 BGIOSGA033172_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA033172-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCTCTGATGTCTTCGAACAGGAATACGTTGAAGATGGCATTGACTGGGCAAAGGTTGAGTTT
GAGGACAATCAGAACTGTTTGAATCTCTTTGAGAAAcggcagaaacggtcgcaagacttcttgg
ctgcagtattgaagatctcaatttagctttgtcgaagaggcacatgaaagttaataatgaaaat
attgtaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGCAGAAACGGTCGCAAGACTTCTTGGCTGCAGTATTGAAGATCTCAATTTAGCTTTGTCGAA
GAGGCACATGAAAGTTAATAATGAAAATATTGTACAGAAACTCACCCTTTCACAGGTTAGTGAG
TTTTGTTCTTAACTAAATGCAAGGTAGCAACAACAGCCATGAAAGTATTGTTAAATTCACAGTT
CTGCACCCACCTCTTTGAATATTGCAGGCAATCGACACAAGAGATGCGTTGGCCAAGTCACTCT
ATGCCAGTTTGTTTGAGTGGCTTGTTGAACAAATTAACAAGTCTCTTTCAGTTGGCAAGCGTCG
AACTGGGAGATCAATCAGCATTCTTGATATCTATGGCTTTGAATCATTCGATGTAATGTACTTC
CATTTGACATGCTGTCATCATATTTTAATTGGCAAATGGTTTCTCATGTCATAACACAAAATTG
CAGAGGAACAGTTTTGAACAGTTCTGTATTAACTATGCTAATGAAAGGCTCCAACAACATTTCA
ATCGCCATTTGTTTAAGCTTGAACAAGAGGTGAGCTATTGCTATGGTTTAAAATCCAGAATATA
TGTTTCAGGATTGCAACCTTCAACCTCTTATTTTTTTCCCATCATCGGCAGTGGCACTTTTTTA
GAGTAATGATTTTCTTGTCATGCTATGAAGTTCCAATGCATATTTTTTTTTCACAAGATCTGGT
GATCTTCTCTTTCTCTTTGTGCACTTCTTGAACATGCTTTTCTGTGCTTTTTGTTAACTAAATG
GAAGACTTGGTAGGTGTTACTAATTCACAGCAGAGATTTTTCTCTAAATTTTCTCTGATGTCTT
CGAACAGGAATACGTTGAAGATGGCATTGACTGGGCAAAGGTTGAGTTTGAGGACAATCAGAAC
TGTTTGAATCTCTTTGAGAAA
Conservation Information
Conserved circRNAs osa_circ_007217*
PMCS
Functional Information
Coding potential Y
Potential coding position 17415403-17415855(-)
17415401-17415379(+)
Potential amino acid sequence MCLFDKAKLRSSILQPRSLATVSAVSQRDSNSSDCPQTQPLPSQCHLQRIPLVQA*(-)
MKVNNENIVQKLTLSQAIDTRDALAKSLYASLFEWLVEQINKSLSVGKRRTGRSISILDIYGFE
SFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYVEDGIDWAKVEFEDNQNCLNLFEKRQKRS
QDFLAAVLKISI*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description leaf senescence
Other Information
References Huang et al., 2021