Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | AT1G48090_circ_g.15 |
| ID in PlantcircBase | ath_circ_006240 |
| Alias | At_ciR4470 |
| Organism | Arabidpsis thaliana |
| Position | chr1: 17737190-17739294 JBrowse» |
| Reference genome | TAIR10.38 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | AT1G48090 |
| Parent gene annotation |
calcium-dependent lipid-binding family protein |
| Parent gene strand | - |
| Alternative splicing | AT1G48090_circ_g.9 AT1G48090_circ_g.10 AT1G48090_circ_g.11 AT1G48090_circ_g.12 AT1G48090_circ_g.13 AT1G48090_circ_g.14 AT1G48090_circ_g.16 AT1G48090_circ_g.17 |
| Support reads | 3 |
| Tissues | leaf |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | AT1G48090.4:4 AT1G48090.6:4 AT1G48090.1:4 AT1G48090.2:4 AT1G48090.3:4 AT1G48090.5:4 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.137721856 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
17739208-17737192(-) |
| Potential amino acid sequence |
MESKDFVDGDTGFWIGVRPDDSWHSIRSLLPLCIAPKSLQNDFIAMEVSMRNGRKHATFRCLAT VVNDSDVNLEISISSDQNVSSGVSNHNAVIASRSSYVLPWGCLSKDNEQCLHIRPKVENSHHSY AWGYCIAVSSGCGKDQPFVDQGLLTRQNTIKQSSRASTFFLRLNQLEKKDMLFCCQPSTGSKPL WLSVGADASVLHTDLNTPVYDWKISISSPLKLENRLPCPVKFTVWEKTKEGTYLERQHGVVSSR KSAHVYSADIQRPVYLTLAVHGGWALEKDPIPVLDISSNDSVSSFWFVHQQSKRRLRVSIERDV GETGAAPKTIRFFVPYWITNDSYLPLSYRVVEIEPSENVEAGSPCLTRASKSFKKNPVFSMERR HQKKNVRVLESIEDTSPMPSMLSPQESAGRSGVVLFPSQKDSYVSPRIGIAVAARDSDSYSPGI SLLELEKKERIDVKAFCKDASYYMLSAVLNMTSDRTKNAEDKHDNGCLLISTSYFEKTTIPNTL RNMESKDFVDGDTGFWIGVRPDDSWHSIRSLLPLCIAPKSLQNDFIAMEVSMRNGRKHATFRCL ATVVNDSDVNLEISISSDQNVSSGVSNHNAVIASRSSYVLPWGCLSKDNEQCLHIRPKVENSHH SYAWGYCIAVSSGCGKDQPFVDQGLLTRQNTIKQSSRASTFFLRLNQLEKKDMLFCCQPSTGSK PLWLSVGADASVLHTDLNTPVYDWKISISSPLKLENRLPCPVKFTVWEKTKEGTYLERQHGVVS SRKSAHVYSADIQRPVYLTLAVHGGWALEKDPIPVLDISSNDSVSSFWFVHQQSKRRLRVSIER DVGETGAAPKTIRFFVPYWITNDSYLPLSYRVVEIEPSENVEAGSPCLTRASKSFKKNPVFSME RRHQKKNVRVLESIEDTSPMPSMLSPQESAGRSGVVLFPSQKDSYVSPRIGIAVAARDSDSYSP GISLLELEKKERIDVKAFCKDASYYMLSAVLNMTSDRTKNAEDKHDNGCLLISTSYFEKTTIPN TLRNMESKDFVDGDTGFWIGVRPDDSWHSIRSLLPLCIAPKSLQNDFIAMEVSMRNGRKHATFR CLATVVNDSDVNLEISISSDQNVSSGVSNHNAVIASRSSYVLPWGCLSKDNEQCLHIRPKVENS HHSYAWGYCIAVSSGCGKDQPFVDQGLLTRQNTIKQSSRASTFFLRLNQLEKKDMLFCCQPSTG SKPLWLSVGADASVLHTDLNTPVYDWKISISSPLKLENRLPCPVKFTVWEKTKEGTYLERQHGV VSSRKSAHVYSADIQRPVYLTLAVHGGWALEKDPIPVLDISSNDSVSSFWFVHQQSKRRLRVSI ERDVGETGAAPKTIRFFVPYWITNDSYLPLSYRVVEIEPSENVEAGSPCLTRASKSFKKNPVFS MERRHQKKNVRVLESIEDTSPMPSMLSPQESAGRSGVVLFPSQKDSYVSPRIGIAVAARDSDSY SPGISLLELEKKERIDVKAFCKDASYYMLSAVLNMTSDRTKNAEDKHDNGCLLISTSYFEKTTI PNTLRNMESKDFVDGDTGFWIGVRPDDSWHSIRSLLPLCIAPKSLQNDFIAMEVSMRNGRKHAT FRCLATVVNDSDVNLEISISSDQNVSSGVSNHNAVIASRSSYVLPWGCLSKDNEQCLHIRPKVE NSHHSYAWGYCIAVSSGCGKDQPFVDQGLLTRQNTIKQSSRASTFFLRLNQLEKKDMLFCCQPS TGSKPLWLSVGADASVLHTDLNTPVYDWKISISSPLKLENRLPCPVKFTVWEKTKEGTYLERQH GVVSSRKSAHVYSADIQRPVYLTLAVHGGWALEKDPIPVLDISSNDSVSSFWFVHQQSKRRLRV SIERDVGETGAAPKTIRFFVPYWITNDSYLPLSYRVVEIEPSENVEAGSPCLTRASKSFKKNPV FSMERRHQKKNVRVLESIEDTSPMPSMLSPQESAGRSGVVLFPSQKDSYVSPRIGIAVAARDSD SYSPGISLLELEKKERIDVKAFCKDASYYMLSAVLNMTSDRTK(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ye et al., 2015 |