Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G48090_circ_g.15 |
ID in PlantcircBase | ath_circ_006240 |
Alias | At_ciR4470 |
Organism | Arabidpsis thaliana |
Position | chr1: 17737190-17739294 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G48090 |
Parent gene annotation |
calcium-dependent lipid-binding family protein |
Parent gene strand | - |
Alternative splicing | AT1G48090_circ_g.9 AT1G48090_circ_g.10 AT1G48090_circ_g.11 AT1G48090_circ_g.12 AT1G48090_circ_g.13 AT1G48090_circ_g.14 AT1G48090_circ_g.16 AT1G48090_circ_g.17 |
Support reads | 3 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G48090.4:4 AT1G48090.6:4 AT1G48090.1:4 AT1G48090.2:4 AT1G48090.3:4 AT1G48090.5:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.137721856 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17739208-17737192(-) |
Potential amino acid sequence |
MESKDFVDGDTGFWIGVRPDDSWHSIRSLLPLCIAPKSLQNDFIAMEVSMRNGRKHATFRCLAT VVNDSDVNLEISISSDQNVSSGVSNHNAVIASRSSYVLPWGCLSKDNEQCLHIRPKVENSHHSY AWGYCIAVSSGCGKDQPFVDQGLLTRQNTIKQSSRASTFFLRLNQLEKKDMLFCCQPSTGSKPL WLSVGADASVLHTDLNTPVYDWKISISSPLKLENRLPCPVKFTVWEKTKEGTYLERQHGVVSSR KSAHVYSADIQRPVYLTLAVHGGWALEKDPIPVLDISSNDSVSSFWFVHQQSKRRLRVSIERDV GETGAAPKTIRFFVPYWITNDSYLPLSYRVVEIEPSENVEAGSPCLTRASKSFKKNPVFSMERR HQKKNVRVLESIEDTSPMPSMLSPQESAGRSGVVLFPSQKDSYVSPRIGIAVAARDSDSYSPGI SLLELEKKERIDVKAFCKDASYYMLSAVLNMTSDRTKNAEDKHDNGCLLISTSYFEKTTIPNTL RNMESKDFVDGDTGFWIGVRPDDSWHSIRSLLPLCIAPKSLQNDFIAMEVSMRNGRKHATFRCL ATVVNDSDVNLEISISSDQNVSSGVSNHNAVIASRSSYVLPWGCLSKDNEQCLHIRPKVENSHH SYAWGYCIAVSSGCGKDQPFVDQGLLTRQNTIKQSSRASTFFLRLNQLEKKDMLFCCQPSTGSK PLWLSVGADASVLHTDLNTPVYDWKISISSPLKLENRLPCPVKFTVWEKTKEGTYLERQHGVVS SRKSAHVYSADIQRPVYLTLAVHGGWALEKDPIPVLDISSNDSVSSFWFVHQQSKRRLRVSIER DVGETGAAPKTIRFFVPYWITNDSYLPLSYRVVEIEPSENVEAGSPCLTRASKSFKKNPVFSME RRHQKKNVRVLESIEDTSPMPSMLSPQESAGRSGVVLFPSQKDSYVSPRIGIAVAARDSDSYSP GISLLELEKKERIDVKAFCKDASYYMLSAVLNMTSDRTKNAEDKHDNGCLLISTSYFEKTTIPN TLRNMESKDFVDGDTGFWIGVRPDDSWHSIRSLLPLCIAPKSLQNDFIAMEVSMRNGRKHATFR CLATVVNDSDVNLEISISSDQNVSSGVSNHNAVIASRSSYVLPWGCLSKDNEQCLHIRPKVENS HHSYAWGYCIAVSSGCGKDQPFVDQGLLTRQNTIKQSSRASTFFLRLNQLEKKDMLFCCQPSTG SKPLWLSVGADASVLHTDLNTPVYDWKISISSPLKLENRLPCPVKFTVWEKTKEGTYLERQHGV VSSRKSAHVYSADIQRPVYLTLAVHGGWALEKDPIPVLDISSNDSVSSFWFVHQQSKRRLRVSI ERDVGETGAAPKTIRFFVPYWITNDSYLPLSYRVVEIEPSENVEAGSPCLTRASKSFKKNPVFS MERRHQKKNVRVLESIEDTSPMPSMLSPQESAGRSGVVLFPSQKDSYVSPRIGIAVAARDSDSY SPGISLLELEKKERIDVKAFCKDASYYMLSAVLNMTSDRTKNAEDKHDNGCLLISTSYFEKTTI PNTLRNMESKDFVDGDTGFWIGVRPDDSWHSIRSLLPLCIAPKSLQNDFIAMEVSMRNGRKHAT FRCLATVVNDSDVNLEISISSDQNVSSGVSNHNAVIASRSSYVLPWGCLSKDNEQCLHIRPKVE NSHHSYAWGYCIAVSSGCGKDQPFVDQGLLTRQNTIKQSSRASTFFLRLNQLEKKDMLFCCQPS TGSKPLWLSVGADASVLHTDLNTPVYDWKISISSPLKLENRLPCPVKFTVWEKTKEGTYLERQH GVVSSRKSAHVYSADIQRPVYLTLAVHGGWALEKDPIPVLDISSNDSVSSFWFVHQQSKRRLRV SIERDVGETGAAPKTIRFFVPYWITNDSYLPLSYRVVEIEPSENVEAGSPCLTRASKSFKKNPV FSMERRHQKKNVRVLESIEDTSPMPSMLSPQESAGRSGVVLFPSQKDSYVSPRIGIAVAARDSD SYSPGISLLELEKKERIDVKAFCKDASYYMLSAVLNMTSDRTK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |