Detail information of AT1G48090_circ_g.15


General Information
CircRNA Name AT1G48090_circ_g.15
ID in PlantcircBase ath_circ_006240
Alias At_ciR4470
Organism Arabidpsis thaliana
Position chr1: 17737190-17739294  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT1G48090
Parent gene annotation calcium-dependent lipid-binding family protein
Parent gene strand -
Alternative splicing AT1G48090_circ_g.9 AT1G48090_circ_g.10 AT1G48090_circ_g.11 AT1G48090_circ_g.12 AT1G48090_circ_g.13 AT1G48090_circ_g.14 AT1G48090_circ_g.16 AT1G48090_circ_g.17
Support reads 3
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G48090.4:4
AT1G48090.6:4
AT1G48090.1:4
AT1G48090.2:4
AT1G48090.3:4
AT1G48090.5:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTACTTTCCATATTTCTTAGTGTGTTCGGGATTGTCGTCTTCTCAAAGTAAGATGTTGAGAT
AAGCAAGCACCCGTTGTCATGTTTATCTTCAGCATTctttgttctgtcagatgtcatgtttaat
actgccgagagcatgtagtatgaggcgtctttgcagaatgcctttacatctatgcgttcctgga
ataggatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGTTCTGTCAGATGTCATGTTTAATACTGCCGAGAGCATGTAGTATGAGGCGTCTTTGCAG
AATGCCTTTACATCTATGCGTTCCTGGAATAGGATTTGTGGTTAGTAAAAGGAACGAATATTGC
CTGGTCTGCCAACCAACTAAAGAAAATGGTGACTCAGCCAGGACTAGGAGGGAAATCTTTCATA
CATAAAAGAGTTGGAAATGGTTTTAAGTATTTAAACACAGCCCATGAAATTTTCAAGCCATTAG
TTTTCAGAATATCATTTAAGCTTTAGCTAGTCACCTTCTTCTCAAGCTCAAGGAGAGAAATTCC
AGGACTGTAACTATCAGAATCCCTAGCTGCGACAGCAATACCAATTCGTGGAGAGACATAAGAA
TCCTTCTGAGACGGAAACAGTACAACGCCACTCCGGCCAGCTGATTCTTGTGGAGAAAGCATGC
TAGGCATAGGACTAGTATCCTCAATAGACTCAAGCACTCGGACATTTTTCTTCTGGTGTCTTCT
CTCCATCGAAAAAACAGGATTTTTCTTAAAAGATTTGGAAGCCCTAGTCAGACAGGGGGAGCCA
GCTTCCACATTTTCTGAAGGTTCAATCTCCACCACTCTATAGCTTAGTGGAAGATAGGAATCGT
TTGTAATCCAGTATGGGACAAAGAACCTTATAGTCTTTGGTGCAGCCCCTGTTTCTCCCACATC
ACGTTCTATACTTACACGCAATCTCCTGAAACTCCAAAAAATAGAGTTGGAAAAAAATCATTTC
ATGGAATATGATATTAGGTTTATGTAAAAGAAAGAAAAAATCTTCATTTGATAACTCTCAACAT
AGTAGGTTCCATCAATAAAGAATGTTCAGCTAGACAAGATTTTCCGAGGGATACTGCTTAGTTT
GAAAAGAGATACTGATATAGCCATAACCTTAACCCCACTTCTTAACAATCATATATTCAATTTA
AACAACAAATATGCATATAATCAAATACCTGGGTAATAAGCAGATAAAAGACTAACCTTTTGCT
CTGTTGATGGACGAACCAAAATGATGACACGCTGTCGTTTGAAGATATATCTAAAACAGGAATA
GGATCCTACAAAAGCAAACTGAAATTCAGTAATGTTCTCAAGTGTAGGTAGTTTCTTGTGCAGA
ATATAAAAGCCAACCTTTTCCAAAGCCCAACCGCCATGGACAGCTAACGTAAGATATACAGGTC
TCTGAATATCTGCTGAATATACATGAGCACTCTTCCTTGAGGATACTACACCATGTTGTCTCTC
GAGATATGTGCCTTCTTTTGTCTTTTCCCACACTGTGAATTTGACAGGACATGGAAGTCTATTT
TCTAGCTTTAAAGGAGAACTAATAGAAATTTTCCAATCATAAACTGGTGTATTGAGGTCTGTAT
GAAGAACTGACGCATCTGCTCCTACACTGAGCCATAATGGCTTACTCCCAGTAGAAGGCTGGCA
GCAGAAAAGCATATCCTTCTTCTCAAGCTGGTTTAATCTCAAAAAAAATGTAGATGCCCTGCTG
CTTTGTTTGATTGTATTCTGCCGAGTCAGTAAACCTTGATCAACAAATGGTTGATCTTTTCCGC
AACCAGAACTCACTGCGATGCAATAACCCCATGCATAAGAATGATGAGAGTTTTCAACCTTTGG
CCGGATATGCAGGCACTGTTCATTATCCTTTGATAAACATCCCCATGGCAAAACATATGAAGAT
CTAGAGGCAATCACAGCATTATGATTGCTTACTCCAGAAGAGACATTCTGATCGGAAGATATAG
ATATCTCTAAATTGACATCTGAATCATTTACAACTGTAGCTAAACATCTGAATGTTGCGTGCTT
TCTCCCATTTCTCATAGAAACTTCCATTGCAATAAAATCATTTTGTAGTGATTTCGGAGCAATA
CAGAGCGGAAGCAGTGAGCGAATGCTATGCCATGAGTCATCAGGACGAACCCCGATCCAGAAAC
CAGTGTCTCCGTCAACAAAATCCTTACTTTCCATATTTCTTAGTGTGTTCGGGATTGTCGTCTT
CTCAAAGTAAGATGTTGAGATAAGCAAGCACCCGTTGTCATGTTTATCTTCAGCATT
Conservation Information
Conserved circRNAs NA
PMCS 0.137721856
Functional Information
Coding potential Y
Potential coding position 17739208-17737192(-)
Potential amino acid sequence MESKDFVDGDTGFWIGVRPDDSWHSIRSLLPLCIAPKSLQNDFIAMEVSMRNGRKHATFRCLAT
VVNDSDVNLEISISSDQNVSSGVSNHNAVIASRSSYVLPWGCLSKDNEQCLHIRPKVENSHHSY
AWGYCIAVSSGCGKDQPFVDQGLLTRQNTIKQSSRASTFFLRLNQLEKKDMLFCCQPSTGSKPL
WLSVGADASVLHTDLNTPVYDWKISISSPLKLENRLPCPVKFTVWEKTKEGTYLERQHGVVSSR
KSAHVYSADIQRPVYLTLAVHGGWALEKDPIPVLDISSNDSVSSFWFVHQQSKRRLRVSIERDV
GETGAAPKTIRFFVPYWITNDSYLPLSYRVVEIEPSENVEAGSPCLTRASKSFKKNPVFSMERR
HQKKNVRVLESIEDTSPMPSMLSPQESAGRSGVVLFPSQKDSYVSPRIGIAVAARDSDSYSPGI
SLLELEKKERIDVKAFCKDASYYMLSAVLNMTSDRTKNAEDKHDNGCLLISTSYFEKTTIPNTL
RNMESKDFVDGDTGFWIGVRPDDSWHSIRSLLPLCIAPKSLQNDFIAMEVSMRNGRKHATFRCL
ATVVNDSDVNLEISISSDQNVSSGVSNHNAVIASRSSYVLPWGCLSKDNEQCLHIRPKVENSHH
SYAWGYCIAVSSGCGKDQPFVDQGLLTRQNTIKQSSRASTFFLRLNQLEKKDMLFCCQPSTGSK
PLWLSVGADASVLHTDLNTPVYDWKISISSPLKLENRLPCPVKFTVWEKTKEGTYLERQHGVVS
SRKSAHVYSADIQRPVYLTLAVHGGWALEKDPIPVLDISSNDSVSSFWFVHQQSKRRLRVSIER
DVGETGAAPKTIRFFVPYWITNDSYLPLSYRVVEIEPSENVEAGSPCLTRASKSFKKNPVFSME
RRHQKKNVRVLESIEDTSPMPSMLSPQESAGRSGVVLFPSQKDSYVSPRIGIAVAARDSDSYSP
GISLLELEKKERIDVKAFCKDASYYMLSAVLNMTSDRTKNAEDKHDNGCLLISTSYFEKTTIPN
TLRNMESKDFVDGDTGFWIGVRPDDSWHSIRSLLPLCIAPKSLQNDFIAMEVSMRNGRKHATFR
CLATVVNDSDVNLEISISSDQNVSSGVSNHNAVIASRSSYVLPWGCLSKDNEQCLHIRPKVENS
HHSYAWGYCIAVSSGCGKDQPFVDQGLLTRQNTIKQSSRASTFFLRLNQLEKKDMLFCCQPSTG
SKPLWLSVGADASVLHTDLNTPVYDWKISISSPLKLENRLPCPVKFTVWEKTKEGTYLERQHGV
VSSRKSAHVYSADIQRPVYLTLAVHGGWALEKDPIPVLDISSNDSVSSFWFVHQQSKRRLRVSI
ERDVGETGAAPKTIRFFVPYWITNDSYLPLSYRVVEIEPSENVEAGSPCLTRASKSFKKNPVFS
MERRHQKKNVRVLESIEDTSPMPSMLSPQESAGRSGVVLFPSQKDSYVSPRIGIAVAARDSDSY
SPGISLLELEKKERIDVKAFCKDASYYMLSAVLNMTSDRTKNAEDKHDNGCLLISTSYFEKTTI
PNTLRNMESKDFVDGDTGFWIGVRPDDSWHSIRSLLPLCIAPKSLQNDFIAMEVSMRNGRKHAT
FRCLATVVNDSDVNLEISISSDQNVSSGVSNHNAVIASRSSYVLPWGCLSKDNEQCLHIRPKVE
NSHHSYAWGYCIAVSSGCGKDQPFVDQGLLTRQNTIKQSSRASTFFLRLNQLEKKDMLFCCQPS
TGSKPLWLSVGADASVLHTDLNTPVYDWKISISSPLKLENRLPCPVKFTVWEKTKEGTYLERQH
GVVSSRKSAHVYSADIQRPVYLTLAVHGGWALEKDPIPVLDISSNDSVSSFWFVHQQSKRRLRV
SIERDVGETGAAPKTIRFFVPYWITNDSYLPLSYRVVEIEPSENVEAGSPCLTRASKSFKKNPV
FSMERRHQKKNVRVLESIEDTSPMPSMLSPQESAGRSGVVLFPSQKDSYVSPRIGIAVAARDSD
SYSPGISLLELEKKERIDVKAFCKDASYYMLSAVLNMTSDRTK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015