Detail information of BGIOSGA001620_circ_g.2


General Information
CircRNA Name BGIOSGA001620_circ_g.2
ID in PlantcircBase osi_circ_009461
Alias Chr01:15977206_15978184(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 17019747-17020725  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA001620
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001620_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA001620-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGTTATTATTGGTGTGTGCACATAAAGAAAACCATTCTCATCAAAAAACCTGTGTGTTGCACA
GGCTAGCTGGTGTCTAATACGCGCAACAGCACCAATcctttcatgctctgaagctaaatcaatt
ccccattcaaccttgttttcgaatttcttatcagtgacatttttcaatagctcgacagcttttg
tatatgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTCATGCTCTGAAGCTAAATCAATTCCCCATTCAACCTTGTTTTCGAATTTCTTATCAGTG
ACATTTTTCAATAGCTCGACAGCTTTTGTATATGAAATGCGCTGAAAAGGTGTCGAGGAAACAA
GCTCCAGACGCTCAATTGCAGTCTTATCGTAATTTTTCACCATGAATTCCATGTCTTCCCGGCA
ATGCTCAAGAAGCCACTTGCAAAGGTACTGTACATATCTTTCTGCACAGTTCATATCATCCTGG
AACACAGTTCGCCAAAATATCATGAAATAACAATTCATACAGAATCTTATAACCAATAGTAGAT
AGATTAATAAGCTAAGATGAAATATTTCAAATGCTGCAAAGGAAAATATGATCTGGATTATTTA
CCTGCAAGTTAGCAAATGCGATTTCTGGTTCAACCATCCAAAACTCTGCCAAATGTCGTGATGT
ATGGGAGTTTTCTGCACGGAATGTTGGTCCAAAGGTATAAACACTGCTAAGAGCACATGCATAG
GTCTCAACTTGAAGCTGTCCAGACACAGTCAGAAAAGCCTGGCGTTTGAAGAAGTCATTCTCAT
AAGCTACTGTCCCATCATCTCTGTACGGAATTCCGGGCTTCAACTTAGATCTTTCCTCCAGCCT
TGAGACATTTTCTTTTGCCTTGTTAAGCTCAGCAACAGCAGCTGTGATTTCTTGTTTGCTAGCT
TTTGCAGCTTTAAGCTGTGCAACCGCATCACCTTTTTCCTTGACAACAACTCTAGCTGCATCAA
TATCAGACTCTGATGGTGCAGGGTTCTCTTTCAATTCCTTCTCCACCTTTTCAGCATGGCTGAA
CAAAGTCGTCACTTGAAACATCTCACCAGCACCCTCACAATCACTTGTAGTTATTATTGGTGTG
TGCACATAAAGAAAACCATTCTCATCAAAAAACCTGTGTGTTGCACAGGCTAGCTGGTGTCTAA
TACGCGCAACAGCACCAAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021