Detail information of BGIOSGA002495_circ_g.2


General Information
CircRNA Name BGIOSGA002495_circ_g.2
ID in PlantcircBase osi_circ_009343
Alias Chr01:1176864_1177077(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 1442574-1442787  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA002495
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA002495_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered BGIOSGA002495-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATCCTTTCGAGTGGCTTTTGCCATGACCTGTATCTTTTTGAAGTGATGAGATCATGTAACGC
CTGTAGCGCTGCCTGCTTCTGCCCAACATGTATCAAcctcctccaaggatgacacattcacttg
ctggcagacaatcctgtactgaataaggccatctttcgcaaacctgcccttcctcaggtctaca
cagagctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCCTCCAAGGATGACACATTCACTTGCTGGCAGACAATCCTGTACTGAATAAGGCCATCTTT
CGCAAACCTGCCCTTCCTCAGGTCTACACAGAGCTCCACATACTTCATCATAATCCTTTCGAGT
GGCTTTTGCCATGACCTGTATCTTTTTGAAGTGATGAGATCATGTAACGCCTGTAGCGCTGCCT
GCTTCTGCCCAACATGTATCAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021