Detail information of BGIOSGA007202_circ_g.2


General Information
CircRNA Name BGIOSGA007202_circ_g.2
ID in PlantcircBase osi_circ_011651
Alias Chr02:1440039_1444678(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr2: 1553396-1558062  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA007202
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA007202_circ_g.1 BGIOSGA007202_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA007202-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACACATTTGCCCTTCTCAAACTTTGAATCTCTGCTTCTTTAGCCTTGATTTCAAGGTCTTTCCT
TGTCCTGTCTTTCTTCAGCTCACTGCATTCGTTTTTcctttctttcaatagctcatgttctcca
tttgaaagggctgtgtcatattccatctgtgacgcaaggacttccatgatcaactccaagaaat
tggcacca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTCTTTCAATAGCTCATGTTCTCCATTTGAAAGGGCTGTGTCATATTCCATCTGTGACGCA
AGGACTTCCATGATCAACTCCAAGAAATTGGCACCACGGACAGTAACTGGACCTAGAAGCACTT
CATACCCCAATTTGCCACTTGAAGCTATATATGCTAACAGAGTGACAACTACCCGACAAAGCTT
GATCCCCTGAAAATAATAGTTTTCTTAGTTGTCCAGTGTTGGAAGTAAAATGTAACAGTAGAAC
TTATGTCATCTTTTGTTTCTCTCTAGAACTCCAGCTTTAAAACCTTTAAGAAATACCATGCAAC
ACCTTTTTTTCAAAGAATGGCAAGTAACAATATTACTATTTTTCAATATATGCAGTCTATGTTC
TTAATAATATGGAAGTTAGCCTTCAATCTAAACATCTAAATGAAAATATACGGTCTGGAAGAGG
AGCAACATACCAGAGAACTTGTTGCCCTACAACTCAAGCATTCAGATAGGTCCTTAAAAATTGA
GCTTATAGCTTCTTGTGATCTATCATTTTCACATCTTATAGCTTCAATCTGCTCAGGGCTATCT
TTACCTCCATTGCATAGCAACTTCAATGTCGTTGGGCCTACCAGCAACAGGAAATCCAGATATC
GGTAAAGAGAGAAAACAAAGTAACAGAAAGGTAAAGGTTTTATCTTCAAAATGGAAAATAAATA
CTCTCCTTCCCAAATTGATCATCATATAGTGGAAACTAAAATTTCTCAAATTGATCATATAACC
ACATGGACACAGATTTCATCGGAGTACAATCAATACAGCACGGGAGAATGTGTGCATGCTAAAG
GGTGTAATTGTGCATTGTGTTTTAATCGATGCATGCATTGTGGGAGAATGTGTGCATATTGTGC
ATGACATCTTGATTGATGCTGTTTAAATTATCCTTGGTCTTGGTGCACAAACGGATGATCAATT
TGGGATGGAGGGAGTATGATTTATGACCCCAAAACATCCAGTATTCCAATAGGAATAGACTTGA
AAAGAAATATATATGTTATTTCTTGGAGCACATTTTTTTAACAGGTATATAGACTGAACAAGAT
CTAATTAAATCCTGGCCAAGCAGCCAAGCTAGCAACAAGACTTTGCAAAAGGGCAGAATTAAGT
TCGAGAAGTTGCAAGGGTCCAGACTCCAGATCACCATTTTGCATTTTGCATGCATTTAATGCAC
CAGTTATTGTCTGATGAAGCGTTTCTGTAGCTATATTCTCTAATACTTTAAATATTTGAGTTGG
TGGTGGTTGATAGTCAATAACTAAACATGAATCGAATTCCACTGCAATAGATGGGCACATTTCA
AGCTCACCAATAAAACAGAGCTATGGAGAAAAAAGAGCCAGTATAACAGGTATTCTACCAGAGG
AAGTGAAGCATTCATTTAGCCTTTAAAAATTCTTGAAACGACACATTCATTTCTAAAACTAATA
CTAAGTATATATAAGCCTGACAACTTACAATTCAATAGCAAGAAAAGTAGATCCACAGAATGCT
TCTTAACAAGCAATCCATTTTCCTTCTGCAACAGTTGATGCAATTTTTCCATTACAGAAGTAAA
TCCGAATCTGAAAGTAGCAGCACATTATCATTAGCGTAAAGCATTGCAACCGATTAAAGAAAGA
AATAATACTCATGTGATTGCTTACTTTTCCCGCTCCACTTTGGGATCACTTGTCCTTGCAATGA
TAATCATTATAGATAATGCATCAACACGAATATTCTCCTCTGAATGCCTGTCCGCAATTTGTAG
CATTGCAGTGAAGAGTGAAGTCCAGACTGTAAAAGGAAGCTGTGTGTTTTCAGTGTGAAGCCCA
TCATGGCTTCTTGATAGACTCGATGCATCAGGTGTATTCAGCGAAGTGGAGCTACCTTTGTGAC
TGTTCCGCTCCATGTGAACAGTATTGTTAACACATGGCTCAATAGAAACATTATTCCTGATGTT
ACACTGAGGAAAATCGTATTAAAGTTCATAAGCATGAGAACCTATCATTATAAACAAGGAAAAA
ATAATGAACAATCGTATTATTGTATATACCCACGTTCTTGTTGTATTGCTGCCTATGTCAAATA
CTTGGTTGATTACAAGGCATCTACAAAATAAAAACCCACCCCACCCAATTCTCTCAGAAATAAC
AAATACAATGGAACAGAAAACAAAGACAATTCACCGTGCTAAATCAATATCAATATCTATTAAT
ATTTCTCAACATTTATCTGATACTACTTTATTTCTACTATGCAGTGATTGATTGCTCAGCCTGG
ATGAAGATAGCAGCCCACAAAAATTGCTCGAAGCACAGCTGGTCAGTTAACAACTATACCTTCC
AAGGCATGCACATTGTAAGAATCAAACTCTAGTTTTGCCAACAATTAGGCTAACTGATTTAGTG
ACACTAAGGTGATACTGCCAGATTTGTATTTAAATGTACTTTCATTTTCTCATGATTTTAGAAT
TAAAAGATAGCATTTTCCAAGAGAGATTTATGGTCAAAGTTCAATTCAAGCAATACAAAACTGA
ACTGACTGGTAGGTTACAGAAGAGAACATTGGTAAGGTATTGAATGCAATAGTAGCTGCTATTC
TATAAGATAAGGTTGGCTGGTCAATATCTGAGTTCAGTGACGAATCCAATTATGAAATACACTT
CCATGGTAACTAGAACCATATTCAATGTAGTAGTAAAGCATACCTCTGATTAGACATCGTTCTG
TTATTCAGCAAGTGCTGCAAGACACTATGTAACATCCGCAGGGCTCTACTAACAACAGCATCCT
GAAAAAAAAACAGTAGGTAAAAATGATAATTAAGTCCAAGGAATAAGAGTAATTGCCTAATTGG
AAAATTGACTGGTTCAATTCAGCATCCACAACACACACACACACACACTACAGAAAAACAACCA
TGACAATAGATCACAAATAAAAGCCTACTTCAGCTTAGATAGTTACTGTATGTCCAACAAACTC
AACCTAAAGTTACTGTATGTCCAACAAACTCAACCTAAAGCCATGTAAGTTTGCATGTGAGAAG
CTATTGTTACTAGTTCTTCAAATAAATCAGCAAGCTAACTGATTCTCAGCCGGCTAGATATTTC
CACAAGTATATGATGAAACTTGGTTTGAAACTGATCTGAGTAATTCTGACTTCCTTGCATAATA
GGAAGCACTAAAATTGGGTTGTCCCGAATGCCGCATCTATTTTTTCTAGACCTAGTGGGGAAGC
CCATAATCATAGACCTGAGAAATGTACTACAAATGGTAATGCAATGTAAATGACTATATAAGCA
TGTAAATGAAGTTGGATAATCAGTTCATACATTACCAACAGCAGCCAAATTTAGCAATGCTTCG
AGAAGAGTTTGTATAGGTATTGTATCACTGCTCGTCTGCAGGGACAAAACAGATAATTTGACAA
TGTGAAACATTAATTCAAATAAAATAGAGTAACATGGAATGAAAAACTAAAAGTAAAGTAGAGA
ACACTCTAACTACAGTATATGGAGATGAATGCATTGTCCCTATTCAATGTTGAAATCTAGTGCA
GACTACAGAGAAGATAGTCCGTTCAAGCTGAAGTTTTTGCCTTGATTAGTAAAAGTTCAAATTC
CACAAAATAGATGGTCAGTTCAAGCTGAAGCAGAGGAAAATTAAAAATAAATGTATATTTTCTA
TCTTTGGCATGTCTATTACCTTTATGATGATATCATATACTTGGGAAATAGCATTTCTGACCGA
TGAGCTCGCTTCAGAAGAGGCTTCACACTTGTCTAGCGATCCCGTAGACTGGACAAGTGTCAAA
ATTTCTTCTGAGCAAGAAACCAGGATCTTTGATATCAGACTCCTCCCCATCAAACTGTTAGTTG
GCATGCCCCACACTGCACACAGATTGCTAGAGATACGGTCAACCAATACTTTCTTGTGCTCAAG
ATATTCGTTATTCCCTGGAAGATCTGTCTGAACCCCTACAGTCTTGATTTCCTTGTGTTTGCTG
CCTTTTGATTCAAAGCGAACACTTTCCTAGCAATCACAGCAGAATAGATCACTAATGGAATATG
CTAGCACCATATAATAGAAAGCAATGTGCCCAGGCAAGACAAGCTACCTCCAAGACCTCAGATG
CATATGTTTGATTCCTTTGGTTCAAACAGAGACCGTCTTGAGGGGAACTGAGCTCCTTGTTTCT
ACCATTTAATGTCTCTGCTCTTCTCGTGGATGCCAAGCAAGAATCCCCAGTATGCAAAGCCCCA
TTTGCAGGGGCATGAACAGACTGATCAATATCCATAGCCATACTGCCGGCATATTTGTTAGCAG
AACCCCTGAATACACAAAAAGGGATGTCAATGATATTGAGCATGCACTCAAATACAGTAGCCAT
GGCACATGTCAATTAACGGTTCAAGGAGAACTATTTCATTTCAATTCAAATTGTTCTCATTCAG
ATAGCATGCATGGCTAAATCATGAGCGATTCCAGGACATGATGAGACAAGACCATGGGTTACTA
AATACAGCACTAGAGTGTCACTTACACATTTGCCCTTCTCAAACTTTGAATCTCTGCTTCTTTA
GCCTTGATTTCAAGGTCTTTCCTTGTCCTGTCTTTCTTCAGCTCACTGCATTCGTTTTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021