Detail information of BGIOSGA028871_circ_g.1


General Information
CircRNA Name BGIOSGA028871_circ_g.1
ID in PlantcircBase osi_circ_018003
Alias Chr08:25628662_25628807(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr8: 25590123-25590268  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method find_circ
Parent gene BGIOSGA028871
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTATTACTGAAAACAAATGTTTGCATTGTTGCATTTCAGAACTATCTAGTAAGCTTGTCAACT
GAAAAACAGggtgataactactcttatcaatcctaaaaaactgtcatttctcttcttttggacc
tctcccaatctcattgtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGATAACTACTCTTATCAATCCTAAAAAACTGTCATTTCTCTTCTTTTGGACCTCTCCCAAT
CTCATTGTCTTTATTACTGAAAACAAATGTTTGCATTGTTGCATTTCAGAACTATCTAGTAAGC
TTGTCAACTGAAAAACAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021