Detail information of Os01g0511800_circ_g.1


General Information
CircRNA Name Os01g0511800_circ_g.1
ID in PlantcircBase osa_circ_001902
Alias Os_ciR2334
Organism Oryza sativa
Position chr1: 18026764-18029607  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os01g0511800
Parent gene annotation Conserved hypothetical protein. (Os01t0511800-01)
Parent gene strand -
Alternative splicing NA
Support reads 4
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os01t0511800-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAAGTCTCCCATGTGTATAGCATAGTTCAGTTAATCAGTTGGTGCAAATAACATGGAGCCATC
ACAATTTCGTCATCAGTTGGTTGCAAACTGTAATGCatttgtataagaaatggtcacttatatg
tgaatgtgtgatcctcaacttctcctagaagttttaaataaagtagagttgcagatatatatta
tgatcctt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 259
Transcript exons: 18026764-18026847,18029433-18029607
ATTTGTATAAGAAATGGTCACTTATATGTGAATGTGTGATCCTCAACTTCTCCTAGAAGTTTTA
AATAAAGTAGAGTTGCAGATAATCTTTCTACAAGCCTTTGCATTAGCATTGGACATGTATCTTT
TTCTAATTACTCTGATTTCTAATCCTTTAACCAAAGTCTCCCATGTGTATAGCATAGTTCAGTT
AATCAGTTGGTGCAAATAACATGGAGCCATCACAATTTCGTCATCAGTTGGTTGCAAACTGTAA
TGC

Genomic sequence ATTTGTATAAGAAATGGTCACTTATATGTGAATGTGTGATCCTCAACTTCTCCTAGAAGTTTTA
AATAAAGTAGAGTTGCAGATATATATTATGATCCTTTGAACCTGACAAAACAGCATAGCATGGT
CAATCAGCTTTGTTAGAAAATACAAAAACCCTGCAATATTTCTAGAAAAAGAACAGCTAACTTG
TAACTCCAAGTAGCATATATTGCAACCTGCTCTTAGAATAGCTTTCTTTTTTTAAAAAAAAACT
TACACTTAATGATACTTAGCCAATGTAATCCCAAGCTTACTGGCAGTGAATCGCTAGGCCAATA
TCTGATTGAACATAGAGAGATTTTAACGAACAATTCCGCAGAATATGAAGAATGAGAAGAATTG
AAGATACAACTAACTCGTTTGTTTTGAAACAAACCATTCCCTCAAGCTAGCTAGCAACATTGAA
AAACTAACACAACTTGCACTGTACTTATGAAGTGCATGCATCGTATCGATCACCAGATTATGCT
AAAGAGATCCATCAAGCAAGGATGCATTTAGAAAACATTCAGATTAAAATCAGTTATGATCTGT
AGTTCAACTGCTAAAACTTTTATTGAGGTCAACAGGTTACAGGTAGCGAATAACTCAGAACCAA
TCCAATGGGCCAATCCGTGATAAAAGAAAAGGTGGCAACAGTAGATCTTTATATTAGATGAGGT
CTTATACTTGTGTGATACTGGAATATCAATTCAAGCTATTTTCTGCTAGCTATGTCATAATAAG
GTGTGAGATTTGGGTACCTGCTACACTTTTTTTTAATAGTAGCCCAAAATCTTTATATCATCAG
CAGATTGATCCTTGTACACATAAGGACCACTTAGGTACCACGAACCTGCAGCACAATGATAATA
TTCTTCAACACATCATTGATTTGCTTGATCAGGGATGTAAGAAAAATTCAAGGGGGACAACATA
AGAGCAATCAGACAACAATATCAAGAAAAACAGTAGTTACCTTTTTGTATTTGTGAAATTTAAA
GAACTACTACTATGCCGGACCATGCCAATCAAGGTTGAAAATAACAAGCCAATATGAAGGCAAA
ATTAATTAGATTCATGGAATGCAATTCGGTTGCACGCTCCTAGCACGGAGGTCGGGAACACAAC
ACACCTTGTGCTTCAATAAAATGTCTCTAAAGAAAGATGCATCATTTCTTTTAATATATCTGTC
TTTGGATCCACTCAAACCAAATTTTAAGAGATTGGTCCTTGGGCAGGTTCATTGTGAGGCAATC
TAAGCCTTGGTAATGAAAAGATAAACACTCAAATTCCTGGACCAGAGAAATGGATCAATTTTCA
TAGTCAGAATTAGAATTGTTCCATGCCAAGTTTAGTTCATCTAATAGGTACTACTCAAATATAG
GTCTTTGCCCTTGCTTGACCAGTGAACCGTTATCTTATAAAATAGTAAAAACTAAAAGTAAAGA
AATAATTGCACGTATGGATATTACCTTCATGTTGTGCTTACGGAGTATATGAAATTAGATACAT
CAACTAGAGACCAATCAATGCTAAATAAAAGAACAAAATCTCCTCGACCAACATCCTGGATAGA
TATGGAGACATGTTGATCATCTATATTAAGGAGTTCATGTGGTCCTGCTCCTCTGCCTCTGTCT
GAAGTTTGGGTAGCCTGAAACAATGGAATTGTTAAAACTAAACACTAGACAGTCTAATTAGTTG
ACTAACAGTTGTCGTACTGATTAGTTCGCCAATTCCCCTTGACCTTTGTCAAATGCACCTTCAT
ATGCACAACAATTTACTCACATAGAAATTCCATTGAATATCTTGCAAATGAATGAAATTGTGAA
TCTAACACTACAGCTAATGATTTCTAGAGGAAAAGCATACTCACTGAATAAACGAACCCTTTTT
TTTCTTGAGAGCAAGCATAATGTACCTTGTTTGTGTGGATATGTTGTTTAACCAAAAGGAGCTC
CAAGACACCATTGTCTAGAGCCTCCATATTATCTAGAGCACTATAAACAAAATATGCTAGCTGT
GTACTGTTTAGCAGTCCCAAGTCACATAAACCAAGCTACTAGGAATAAATCATAATTGAGCTTA
ATCATTGATTTTCTACTTTTGTGGAGTATGGAACAAAACTACAAATAAATAACAAAACCATTCC
TTGATATGTCTATATGTACATATCACGAAACATAATGTATATACATGAATATTCACCAAATGAA
GTCATATCCACGCTGTTTTGTGTAGTGAGCTTAATCAAGTAGCTCTTGGGGATTAGCACCGGAT
CAATAGGGCATGTTGAACTGTTAGTCGATACAGTAGTTAGATGCACACAAACCACCACATGACC
ACTCACGGGTGAAACATAATAAAGAACCTTAGGATTATACCTGACCGTTTAGGTTCCTATTCTT
CTTGACCTGGCGAAGAAATATTTCAGCTCCTGCACTTTTCTATTGCAGCATGTACGGAGATAAA
TCAAATTGATTGCTGCATATAATTTATTATAGAATTTGTCATGTTAATTCAGAGTGCAAGGGAA
ACAATACCTTAGAGGTAAGCACTGTCACCGTCTGAAGTAGCTAGAAGGCTCTCAGAATACATGA
TCGTGTTGTAGTGTCTAGAGATTATTTCGGGTAAACACTCTACATAATCTTTCTACAAGCCTTT
GCATTAGCATTGGACATGTATCTTTTTCTAATTACTCTGATTTCTAATCCTTTAACCAAAGTCT
CCCATGTGTATAGCATAGTTCAGTTAATCAGTTGGTGCAAATAACATGGAGCCATCACAATTTC
GTCATCAGTTGGTTGCAAACTGTAATGC
Conservation Information
Conserved circRNAs osi_circ_009627
PMCS 0.431242155
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015