Plant Circular RNA Database

Detail information of Zm00001d023543_circ_g.2

			
						 General Information
					
						CircRNA Name
						Zm00001d023543_circ_g.2
					
						ID in PlantcircBase
						zma_circ_006053
					
						Alias
						Rdr_test_circ_002382
					
						Organism
						
							Zea mays						
					
						Position
						
							chr10: 9579778-9584061  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							ei-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Zm00001d023543						
					
						Parent gene annotation
						
							Fatty acid amide hydrolase
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Zm00001d023543_circ_g.1 Zm00001d023543_circ_g.3 						
					
						Support reads
						NA
					
						Tissues
						root
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-TA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d023543_T003:4
Zm00001d023543_T002:5
Zm00001d023543_T001:5

General Information
CircRNA Name	Zm00001d023543_circ_g.2
ID in PlantcircBase	zma_circ_006053
Alias	Rdr_test_circ_002382
Organism	Zea mays
Position	chr10: 9579778-9584061 JBrowse»
Reference genome	AGPv4.38
Type	ei-circRNA
Identification method	find_circ
Parent gene	Zm00001d023543
Parent gene annotation	Fatty acid amide hydrolase
Parent gene strand	-
Alternative splicing	Zm00001d023543_circ_g.1 Zm00001d023543_circ_g.3
Support reads	NA
Tissues	root
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-TA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d023543_T003:4 Zm00001d023543_T002:5 Zm00001d023543_T001:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CACGCACCGGAGCCGCTGCGCGTTCAGGTACGCCCTGCTGCTGAAGGAGCCGTAGACGCTGAGC
GCCACCCTCGCGTCCCAGCCGATCTCGGACCTCTTGcagcttgtccaggtacttggcgagcgac
gtcgtgcactcggagccgatggtgacgtagtgcgccagccgcatctcctccacctccgggatgg
tcacgtcc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CAGCTTGTCCAGGTACTTGGCGAGCGACGTCGTGCACTCGGAGCCGATGGTGACGTAGTGCGCC
AGCCGCATCTCCTCCACCTCCGGGATGGTCACGTCCACGGTCTACATGTGCACGCACGCAGGCA
TTCCATCAGGTGATCGAATTGAATCAACCACAGCCACAGCCACCCTCTCGCCGCCGCCGGCCGT
ACCTGCCAGCCGTAGTTCGCGCGCAGCGCCTGCAGCGCCTTGTCGCAGCAGCTCCTGATGTCCT
CGGCGCTGTCATTGAACCACTGCAAAAAACAAAAACAAAAAAAATTGCGGCAACCAGCGGTCGT
CAAAGTAATGCTATGCATGCGTTCATTGCAGACGATGGCGTCGTCACATCCTTATCTGGCGAGC
TTTGATGCTGCTAACCTTTCCGTATCTGGCGAGCTTGATGTTGCCGATGGAGAGTGTGGAGCCG
AGCTGAGGAAGATTCAGTTCCGGCTGCAGGTGGCAAGCACTCGCCCCGTCAGTCGGATGGTGGA
GACGACAGGTACAGTAGAGATGAGATTCAGCAGAGAAAGAAGGGAGCTGGGATTCACCCGCAAG
TAGGACGGCTGGGACTGGTCGACGATCGCCGAGTAGCTGGAAGAAAAAGATGGGTGAGATTCAT
TCAGATTCAGTAGCAATTGGAGAAAGAAAGGAAGAAGAAAGAAAACAAGGCGTGTGGCGACGAA
TGACTGACGCCATGAGCGCGTCCTCCACCGTCCCCGCCAGGATCCCCGGCATGCCGACCGTCCA
GTTGAGCGGGAGGACGCCGGCGTTGGAGAGGCGCCCGGCGGTGGGCTTGAACCCGACGACGCCG
CACAGCGCCGCCGGCATCCGGACGGAGCCTAGAATCGACGCACGGCATGCATGGACTCAACCTC
GCCCGACCCCCGGGGCTCGGACTCAACCTCGACCTCGGACGACAGGCTCCGCCTCGCCCGACCC
CCGGGGCTTGGACTCAACCTCGACCTCGGAGGAGCCTCCGCCTCGCCCGACCTCGGGCTCAGAC
CGACCACGTCACAGGGGGGCCATCATTACCCTACCCCTAGCTAGCTCAGCTACAGGGAACAAGA
CCGGCGTCCCATTTGGTTCGCCCCGGTAAACAAGTAATGATGGCACCCCGCGTGCTCCATGACG
ACGGCGGCTCTCAGCCTCTTACGAAAGCAAGGAGACATCAGCAAGGATCCGACAGCCCCGACAG
CTGTACTTCCACGGGACTCAAGCGCTCCTCCGACGGCCACGACATCACATGAACAGGGCAGCAA
CACCTCTCCGACAGCCACGACGGCATGTACTTAGGGCTCTGGCTCCTCTCTGCTAGACACGTTA
GCACATCGCTACACCCCCCATTGTACACCTGGACCCTCTCCTTACACCTATAAAAGGAAGGTCC
AGGGCTCTCGCACGAGAAGGTGGCCGCGCGGGAGAACGGGCTGGCGGACAGTCTCTCTCTCTCT
CCCTCGCGAACGCTTGTAACCCCCTACTGCAAGCGCATCCGCCCTGGGCGCAGGACAACACGAA
GGCCGCGTTTTCCCCTTGCTGTTTTTTCCCTTTGTGTTCCGTCTCGCGCCGACCCATCTGGGCT
GGGACATGCAACGACAATTTACTCGTCAGTCCAGGGACCCCCCGGGATCGAAACGCCGACAAGC
ATACACATCGATTCATGTGTTTCGTCTCTCACGCCATCCATCGGCAGATCACTTCAATGTGATG
TGCGGATCCAGTTGAAATAAGATTTTCAAAGTTAAAATTCCTAAAAAGGAATTATTTAAGATAT
AAAATATTGCAAGAAAGGCTAAATAGTTTGAGTATTTCTATACATGTTGTCATTACATGAATTC
GCATCGAGACATGTTGAAAAGGCGGTCATATATTACACTCCATCTGTTCTAAAATAATAGTATT
TTTAGCTCTATATTTTTATGTTCACATTCATATGGATGATTATTAACCTAGACATATATTGAAC
ACATCTATCATTTATTGTATGAATTTAGTAAAAAGGTAAAACTAAGTTTAATTTGGGATAGAGG
GAGTATATCTTTTTACTTGAAATAGATATATTAAGTAAAAAGGTAAAACTAAGTTTAATTTAGG
ACAGAGGGAGTATATCTTTTTACTTGAAATAGATATTTTTATACACGTTTGAGGATTTATTAGC
AATATATATATTATAAAAACATTATAAAAATATGGATCCCTCTATCTTAAGGGCCTGTTTGTTT
ACCCCCAGATTATATAATCTGGATTAAATAATCCTAAGAGGCAAACAAACAGTCCAGCTTATTT
GTCCAGATTATATAATCTAACCCCTTGGATTATGATAATCCATAAGCAAGTGAGGAGGTGCTTA
TTTCAGATTATTTTTTCCCACTTCCCCACTACCCTTTCAAGTTTCCTAGAAATTACCCACCATT
GCCATTATAATCCACCGAATCGTTTTTGCGCCTAGTACTAGTCAATTTGGGGATGAAGAAGGTG
ACATGAATGCCTTCCGTGATAATATTACTAATGCAATATTTGCCAATGTCAATTGAATTATTTT
TTTTCATATATGAGTTTCAACCTAGTACAAATATAGAGGGCATTCTTGCCTTCCTCATACAAAA
GAATCCTATTAACAACTCAAATAATCTGGGTAAACAAACAGGACTACTCAGATTATATAATCCA
GATTATATAAGCCAGATTATATAATCCTCTAAAAATAATCCAGATTATATAATCCATGGGGGTA
AACAAACAGGCCCTAAGTATTGCTCTGAGCCTCAATTTATCAGGACCGGCGCTTTAGGACTTTG
TAAGCTCGAGAAGAAGAGTAACTAGATTTACCTCAAATTGACATATCTCAAAATTCACAAACCC
GAGCAGGTCCGTCGTTTTAATAAGCCCTCACCAAGAGGCAAAGGACTGTGTATCACATACTCAC
AAATTCACATGGGCGGATCGGGAGGGTAGTACGGGCCGTCCAGGCCTACAAATTAACAACTGGA
GGCACGTGTGTGGCTCGCCGCCTCCGCGCCCACGTGTGCCGCGCGTCCAAGTCGCTGACGTTGG
TGTCAACGGCGACCGCCGTGGCGCCGTGGGATTTGAATTTATAGGCGCCCAACACTTACACGTA
TGTTCTCTTGGACGGGGTCACGGGGATTTGAATTTGTTTTTTATTTTTAACAAAAAAACACTTG
AAAGAGAAGCTTTACTGCGTAATTGTTACAACAATATGTATCCGGACAGGATTTTGTGCCGCCG
AGTCTGATGATGTACCGCTAGTGAGTGAAATTTCTTTCTCTCTTCTCAGATTATGAACGACCTC
AATTATTTTTTATTTACCGTGTTTTAGTTCAAGAATGAACTAGTAGTCAACGACAAATACTCGA
TAATGATTCGAGAATGAAGGTATACATGACAACAATTGTCCTGCTGCTATACGTCTCTTCTCCT
CCGATCGACCCCCACGGATACATATACGGTGGATCCTCGCTCGCTCGCCGCCGGCGGCGGCGGC
GCGTCGCTGACCTCAGTCCTGTTGCTTGCCGAGGAGGTCGTAGAACACCGGCGGCTTCTTGTAC
CCCTTGGCGCACGCCTGCTGCGTGGCGAAGGCCACGTGGAGGAGGGTGGCCTCGGCCCACGGCC
TGCCGATGAACTGGAGGCCGATGGGGAGGCCGCCCCTGTCGTAGCCGACCGTGACGGTGATGGC
CGGCAGGCCGAGGAAGTTGCCGGCTATGGAGTACCGGACCAGCGCGGCTGCATGCAGTTAAGAG
CAGTGAGCCAGTCAGGAACTCAGGACTCAGGATGGATGCACCGATGCCGCCGGTGCAGAGGGAT
TCAATGGGAATGCGGACGTACCTCCGTTTATGTAGTCGAGCTCCCCGGTGCTGAGCGCGTCGTC
TTGCAGCGGGTACGCAGTCACACTTGATAGAAACGGAAGGATGCGAGCTCCATTACACCATTTT
TACATGTGAAGTGTGACGAGAGAGCTGAAGAAGAAGGTAGTAGTAGTAGTACCCGGTCATCGGC
GAGACGATGACGTCCGCGGCCTTGAAGATCTGCTTGTGGAAGTACATCTGGCGGTTCCTGAACA
ACGCAAGAACGGAACAGTACGTCAGTGGGCACGGCACTGACTGCAACCGCAGGATCGACGCCGC
CGCCATCGGCTAGCTTAGCTCACGCACGCACCGGAGCCGCTGCGCGTTCAGGTACGCCCTGCTG
CTGAAGGAGCCGTAGACGCTGAGCGCCACCCTCGCGTCCCAGCCGATCTCGGACCTCTTG
						
					

			
		

Sequences
Splice junction sequence	CACGCACCGGAGCCGCTGCGCGTTCAGGTACGCCCTGCTGCTGAAGGAGCCGTAGACGCTGAGC GCCACCCTCGCGTCCCAGCCGATCTCGGACCTCTTGcagcttgtccaggtacttggcgagcgac gtcgtgcactcggagccgatggtgacgtagtgcgccagccgcatctcctccacctccgggatgg tcacgtcc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CAGCTTGTCCAGGTACTTGGCGAGCGACGTCGTGCACTCGGAGCCGATGGTGACGTAGTGCGCC AGCCGCATCTCCTCCACCTCCGGGATGGTCACGTCCACGGTCTACATGTGCACGCACGCAGGCA TTCCATCAGGTGATCGAATTGAATCAACCACAGCCACAGCCACCCTCTCGCCGCCGCCGGCCGT ACCTGCCAGCCGTAGTTCGCGCGCAGCGCCTGCAGCGCCTTGTCGCAGCAGCTCCTGATGTCCT CGGCGCTGTCATTGAACCACTGCAAAAAACAAAAACAAAAAAAATTGCGGCAACCAGCGGTCGT CAAAGTAATGCTATGCATGCGTTCATTGCAGACGATGGCGTCGTCACATCCTTATCTGGCGAGC TTTGATGCTGCTAACCTTTCCGTATCTGGCGAGCTTGATGTTGCCGATGGAGAGTGTGGAGCCG AGCTGAGGAAGATTCAGTTCCGGCTGCAGGTGGCAAGCACTCGCCCCGTCAGTCGGATGGTGGA GACGACAGGTACAGTAGAGATGAGATTCAGCAGAGAAAGAAGGGAGCTGGGATTCACCCGCAAG TAGGACGGCTGGGACTGGTCGACGATCGCCGAGTAGCTGGAAGAAAAAGATGGGTGAGATTCAT TCAGATTCAGTAGCAATTGGAGAAAGAAAGGAAGAAGAAAGAAAACAAGGCGTGTGGCGACGAA TGACTGACGCCATGAGCGCGTCCTCCACCGTCCCCGCCAGGATCCCCGGCATGCCGACCGTCCA GTTGAGCGGGAGGACGCCGGCGTTGGAGAGGCGCCCGGCGGTGGGCTTGAACCCGACGACGCCG CACAGCGCCGCCGGCATCCGGACGGAGCCTAGAATCGACGCACGGCATGCATGGACTCAACCTC GCCCGACCCCCGGGGCTCGGACTCAACCTCGACCTCGGACGACAGGCTCCGCCTCGCCCGACCC CCGGGGCTTGGACTCAACCTCGACCTCGGAGGAGCCTCCGCCTCGCCCGACCTCGGGCTCAGAC CGACCACGTCACAGGGGGGCCATCATTACCCTACCCCTAGCTAGCTCAGCTACAGGGAACAAGA CCGGCGTCCCATTTGGTTCGCCCCGGTAAACAAGTAATGATGGCACCCCGCGTGCTCCATGACG ACGGCGGCTCTCAGCCTCTTACGAAAGCAAGGAGACATCAGCAAGGATCCGACAGCCCCGACAG CTGTACTTCCACGGGACTCAAGCGCTCCTCCGACGGCCACGACATCACATGAACAGGGCAGCAA CACCTCTCCGACAGCCACGACGGCATGTACTTAGGGCTCTGGCTCCTCTCTGCTAGACACGTTA GCACATCGCTACACCCCCCATTGTACACCTGGACCCTCTCCTTACACCTATAAAAGGAAGGTCC AGGGCTCTCGCACGAGAAGGTGGCCGCGCGGGAGAACGGGCTGGCGGACAGTCTCTCTCTCTCT CCCTCGCGAACGCTTGTAACCCCCTACTGCAAGCGCATCCGCCCTGGGCGCAGGACAACACGAA GGCCGCGTTTTCCCCTTGCTGTTTTTTCCCTTTGTGTTCCGTCTCGCGCCGACCCATCTGGGCT GGGACATGCAACGACAATTTACTCGTCAGTCCAGGGACCCCCCGGGATCGAAACGCCGACAAGC ATACACATCGATTCATGTGTTTCGTCTCTCACGCCATCCATCGGCAGATCACTTCAATGTGATG TGCGGATCCAGTTGAAATAAGATTTTCAAAGTTAAAATTCCTAAAAAGGAATTATTTAAGATAT AAAATATTGCAAGAAAGGCTAAATAGTTTGAGTATTTCTATACATGTTGTCATTACATGAATTC GCATCGAGACATGTTGAAAAGGCGGTCATATATTACACTCCATCTGTTCTAAAATAATAGTATT TTTAGCTCTATATTTTTATGTTCACATTCATATGGATGATTATTAACCTAGACATATATTGAAC ACATCTATCATTTATTGTATGAATTTAGTAAAAAGGTAAAACTAAGTTTAATTTGGGATAGAGG GAGTATATCTTTTTACTTGAAATAGATATATTAAGTAAAAAGGTAAAACTAAGTTTAATTTAGG ACAGAGGGAGTATATCTTTTTACTTGAAATAGATATTTTTATACACGTTTGAGGATTTATTAGC AATATATATATTATAAAAACATTATAAAAATATGGATCCCTCTATCTTAAGGGCCTGTTTGTTT ACCCCCAGATTATATAATCTGGATTAAATAATCCTAAGAGGCAAACAAACAGTCCAGCTTATTT GTCCAGATTATATAATCTAACCCCTTGGATTATGATAATCCATAAGCAAGTGAGGAGGTGCTTA TTTCAGATTATTTTTTCCCACTTCCCCACTACCCTTTCAAGTTTCCTAGAAATTACCCACCATT GCCATTATAATCCACCGAATCGTTTTTGCGCCTAGTACTAGTCAATTTGGGGATGAAGAAGGTG ACATGAATGCCTTCCGTGATAATATTACTAATGCAATATTTGCCAATGTCAATTGAATTATTTT TTTTCATATATGAGTTTCAACCTAGTACAAATATAGAGGGCATTCTTGCCTTCCTCATACAAAA GAATCCTATTAACAACTCAAATAATCTGGGTAAACAAACAGGACTACTCAGATTATATAATCCA GATTATATAAGCCAGATTATATAATCCTCTAAAAATAATCCAGATTATATAATCCATGGGGGTA AACAAACAGGCCCTAAGTATTGCTCTGAGCCTCAATTTATCAGGACCGGCGCTTTAGGACTTTG TAAGCTCGAGAAGAAGAGTAACTAGATTTACCTCAAATTGACATATCTCAAAATTCACAAACCC GAGCAGGTCCGTCGTTTTAATAAGCCCTCACCAAGAGGCAAAGGACTGTGTATCACATACTCAC AAATTCACATGGGCGGATCGGGAGGGTAGTACGGGCCGTCCAGGCCTACAAATTAACAACTGGA GGCACGTGTGTGGCTCGCCGCCTCCGCGCCCACGTGTGCCGCGCGTCCAAGTCGCTGACGTTGG TGTCAACGGCGACCGCCGTGGCGCCGTGGGATTTGAATTTATAGGCGCCCAACACTTACACGTA TGTTCTCTTGGACGGGGTCACGGGGATTTGAATTTGTTTTTTATTTTTAACAAAAAAACACTTG AAAGAGAAGCTTTACTGCGTAATTGTTACAACAATATGTATCCGGACAGGATTTTGTGCCGCCG AGTCTGATGATGTACCGCTAGTGAGTGAAATTTCTTTCTCTCTTCTCAGATTATGAACGACCTC AATTATTTTTTATTTACCGTGTTTTAGTTCAAGAATGAACTAGTAGTCAACGACAAATACTCGA TAATGATTCGAGAATGAAGGTATACATGACAACAATTGTCCTGCTGCTATACGTCTCTTCTCCT CCGATCGACCCCCACGGATACATATACGGTGGATCCTCGCTCGCTCGCCGCCGGCGGCGGCGGC GCGTCGCTGACCTCAGTCCTGTTGCTTGCCGAGGAGGTCGTAGAACACCGGCGGCTTCTTGTAC CCCTTGGCGCACGCCTGCTGCGTGGCGAAGGCCACGTGGAGGAGGGTGGCCTCGGCCCACGGCC TGCCGATGAACTGGAGGCCGATGGGGAGGCCGCCCCTGTCGTAGCCGACCGTGACGGTGATGGC CGGCAGGCCGAGGAAGTTGCCGGCTATGGAGTACCGGACCAGCGCGGCTGCATGCAGTTAAGAG CAGTGAGCCAGTCAGGAACTCAGGACTCAGGATGGATGCACCGATGCCGCCGGTGCAGAGGGAT TCAATGGGAATGCGGACGTACCTCCGTTTATGTAGTCGAGCTCCCCGGTGCTGAGCGCGTCGTC TTGCAGCGGGTACGCAGTCACACTTGATAGAAACGGAAGGATGCGAGCTCCATTACACCATTTT TACATGTGAAGTGTGACGAGAGAGCTGAAGAAGAAGGTAGTAGTAGTAGTACCCGGTCATCGGC GAGACGATGACGTCCGCGGCCTTGAAGATCTGCTTGTGGAAGTACATCTGGCGGTTCCTGAACA ACGCAAGAACGGAACAGTACGTCAGTGGGCACGGCACTGACTGCAACCGCAGGATCGACGCCGC CGCCATCGGCTAGCTTAGCTCACGCACGCACCGGAGCCGCTGCGCGTTCAGGTACGCCCTGCTG CTGAAGGAGCCGTAGACGCTGAGCGCCACCCTCGCGTCCCAGCCGATCTCGGACCTCTTG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.004726881

Conservation Information
Conserved circRNAs	NA
PMCS	0.004726881

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Tang et al., 2018

circRNA

Detail information of Zm00001d023543_circ_g.2

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