Detail information of Os03g0815200_circ_g.2


General Information
CircRNA Name Os03g0815200_circ_g.2
ID in PlantcircBase osa_circ_022425
Alias Os_ciR4760
Organism Oryza sativa
Position chr3: 34169343-34171665  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0815200
Parent gene annotation Similar to Methylenetetrahydrofolate reductase (EC 1.5.1.20). (O
s03t0815200-01);Similar to Methylenetetrahydrofolate reductase.
(Os03t0815200-02);Similar to Methylenetetrahydrofolate reductase
. (Os03t0815200-03);Similar to Methylenetetrahydrofolate reducta
se (Fragment). (Os03t0815200-04)
Parent gene strand -
Alternative splicing Os03g0815200_circ_g.3 Os03g0815200_circ_g.4 Os03g0815200_circ_g.5 Os03g0815200_circ_g.6 Os03g0815200_circ_g.7 Os03g0815200_circ_g.8
Support reads 4
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0815200-01:9
Os03t0815200-03:3
Os03t0815200-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTTTGAATCCCATTAGACTTTATTGTTGTTAAGGCATCATCAATCTTCTCAACTGGCATATT
GGTGCATGTCAGGTGCATCATTGTTTCCACACACACcaacacttgttgaatcagatctctctcc
attaacagcaggttggctgttaatggtaaggaagcccttctggttaatcttcaccaattggtcg
tctattat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1147
Transcript exons: 34169343-34169520,34169619-34169699,34170043-34170154,34
170245-34170345,34170415-34170588,34170727-34170900,3417
1097-34171179,34171266-34171326,34171483-34171665
CAACACTTGTTGAATCAGATCTCTCTCCATTAACAGCAGGTTGGCTGTTAATGGTAAGGAAGCC
CTTCTGGTTAATCTTCACCAATTGGTCGTCTATTATCTTTGTCTCAGGTTGAAGGCCATCAAGC
TCAGACCATGGGCTGCTTGTAAGTTTTCCTTGACAGAAGTTCATGAATCGCTCGTTAATGTCTT
CAACAGATTTCACTGGAACCGCCCATTCCTCTTGGAGCTTCTTACCCCTCCCACGTGGTCGAGT
GAACTGGTAGTCAGTAAGTGCTCCATACGATGGGTTCCGGGAATCACCCCACCGCCCATGTGGG
TATTGATCCCAACCAAGGGTCCTTGAAATATAGCTCTTTGGTCTGTTAGCCCAGAATATAGGGC
GGACATCCTCCTTGACACGGAAAACATTTGTTGGGGGCCTCCAAGGCAATGACCTTGAGATCTT
GGACTCCTCAATTAATCCAAGGTTCATCAATATTCCTAGAGCAGACTTCTCCATGTTTAGCGTG
TAAAGGTGCAAGGTCTTGATTCCAGTAGCTAAAATTTTCTTGCACATTTCAGTACCAAGGTGGA
TTCCATATGCTTTGACCGCCTCCTCGTTATCTTTAATAGGTTCCAGTGCAGCAGTGATCTCAGC
TGGTATCTTAGTTTTGCAGAACCCTGTCATGCGCAGGAAACCTTTGTAGTTATTTATAGGCATT
ATGCCAGGAACAATGGGGCAAGTTATGCCAATTTGGCGGCAGTCATTCACAAACTTGAGAAAGA
TATCAGTGTCATAGAAAAGCTGTGTAATGATAAGGTCAGCACCAGCATCAACCTTTTGCTTCAA
ATAAGCAAGATCATTGCTGTATGCTTCTGGTGTAGCCCCTTCCGTACTTTGTATTGCATCCGGG
TGGGCCTCTGGATAACCAGCAACAGTAATACCAAAATAATCACCATACTTGGCTCTAATGTGTT
GTACCAAATCAAGAGCACAAGCGAATCCACCAGCAACTTGAACAAATTTGTCCTGACCATGTGG
AGGATCACCCCTAAGAGCCAGAACATTTTGAATCCCATTAGACTTTATTGTTGTTAAGGCATCA
TCAATCTTCTCAACTGGCATATTGGTGCATGTCAGGTGCATCATTGTTTCCACACACAC

Transcript length: 115
Transcript exons: 34169343-34169403,34171612-34171665
CAACACTTGTTGAATCAGATCTCTCTCCATTAACAGCAGGTTGGCTGTTAATGGTAAGGAACTT
CTCAACTGGCATATTGGTGCATGTCAGGTGCATCATTGTTTCCACACACAC

Genomic sequence CAACACTTGTTGAATCAGATCTCTCTCCATTAACAGCAGGTTGGCTGTTAATGGTAAGGAAGCC
CTTCTGGTTAATCTTCACCAATTGGTCGTCTATTATCTTTGTCTCAGGTTGAAGGCCATCAAGC
TCAGACCATGGGCTGCTTGTAAGTTTTCCTTGACAGAAGTTCATGAATCGCTGTGTGACAGAAA
TTGGTTAGCAAAAAAAAAATGATACACTCGTATTTATCTATACATAATAAAGATATATAATATA
TCAAGCAGCCCAGCAGTTACCTCGTTAATGTCTTCAACAGATTTCACTGGAACCGCCCATTCCT
CTTGGAGCTTCTTACCCCTCCCACGTGGTCGAGTGAACTGTAAAATAATAAGAAGGAACGCGTT
ACTACACACAGCAACAACTTTGTGAAAATTTCTTAACTTGTTATCACAAAAGAACAATTCTATG
TAATATGGAGACAAATAATAGACATGCCCGACAACTGATGTTGCACAATCCCACATTCAAGTAT
TCGACAATTACCAAGTACCAGTACACAGAGGTACTGACGTTGCTAAATCATATGTAAGAGTTCA
CTTTATAGTTTATAATAGATAAATGTAACTTTTAGTGTGTTTCAAAATACTGCAGACAGCATAT
CGGGAAAAAATGGTTGAGAACACCAAATTTGTAATTGGAACAGAGGGGCATGGAAGTAACCTGG
TAGTCAGTAAGTGCTCCATACGATGGGTTCCGGGAATCACCCCACCGCCCATGTGGGTATTGAT
CCCAACCAAGGGTCCTTGAAATATAGCTCTTTGGTCTGTTAGCCCTGCTCAGTTATCATCATTC
ACCAGATTGAATGAGTGTTTATAACAATAAGATTCAATTACCTTGACAAATATTTTTTTTAAAC
AACTACCAGAATATAGGGCGGACATCCTCCTTGACACGGAAAACATTTGTTGGGGGCCTCCAAG
GCAATGACCTTGAGATCTTGGACTCCTCAATTAATCCAAGGTTCTGGATAAATTTTACTTGTTA
GAAATGCACCAGACCAAAATACTGCATCAAGTAAGATGTGGAAATTACCATCAATATTCCTAGA
GCAGACTTCTCCATGTTTAGCGTGTAAAGGTGCAAGGTCTTGATTCCAGTAGCTAAAATTTTCT
TGCACATTTCAGTACCAAGGTGGATTCCATATGCTTTGACCGCCTCCTCGTTATCTTTAATAGG
TTCCAGTGCAGCAGTGATCTCAGCTGGTATCTGTTATTAAATTCAAAATTTTCAGTGGCATTCT
GTGGGAAACAATGTACAGCACATTGAAGCTTATACATAAATCCATGTCCATTTGAACTATCTCC
ATGCAATTACTAATCATGGAGCTACAGAAACAGGCTATACCTTAGTTTTGCAGAACCCTGTCAT
GCGCAGGAAACCTTTGTAGTTATTTATAGGCATTATGCCAGGAACAATGGGGCAAGTTATGCCA
ATTTGGCGGCAGTCATTCACAAACTTGAGAAAGATATCAGTGTCATAGAAAAGCTGTGTAATGA
TAAGGTCAGCACCAGCATCAACCTGCAGTGAAAGTGTGCATTCGATAAGAAGCTGACAAAGAAC
AAAGGTACGCTAAACAAACACCTATGTTTTCTAACAGTTTTACATAATTCCGAAATAAGATCTT
ATGCTAGACAATGTCCAGGTGATTAATTAATACAACAGAAGATGTTCTCATTTGAATGGAAAAA
GTCATTATCATGTGATCAAAGAGAACCTTTTGCTTCAAATAAGCAAGATCATTGCTGTATGCTT
CTGGTGTAGCCCCTTCCGTACTTTGTATTGCATCCGGGTGGGCCTCTGACGTTTGAAACAAAAA
TAAATAAATAAAGCTTCTAATTTTTAAGGTTTAATATCACTGTATAAAGCAGAAACGTTTTGCT
AACCTGGATAACCAGCAACAGTAATACCAAAATAATCACCATACTTGGCTCTAATGTGTTGTAC
CTGCAATTGGAGAATAGAACGCAGGTTTGAATATAGTGGTGATTTCTCTCAGCAAATAAATGGT
TTTTATATACATAATCCTAAATATTGGCAGCACCAATCAGCTCGCCACCATATCCTGGCCTTTC
TATCATAACTAATCGAAGAGATATTTACCAAATCAAGAGCACAAGCGAATCCACCAGCAACTTG
AACAAATTTGTCCTGACCATGTGGAGGATCACCCCTAAGAGCCAGAACATTTTGAATCCCATTA
GACTTTATTGTTGTTAAGGCATCATCAATCTTCTCAACTGGCATATTGGTGCATGTCAGGTGCA
TCATTGTTTCCACACACAC
Conservation Information
Conserved circRNAs NA
PMCS 0.263731619
Functional Information
Coding potential Y
Potential coding position 34171636-34169455(+)
34171652-34171618(-)
34169374-34171618(-)
Potential amino acid sequence MSGASLFPHTPTLVESDLSPLTAGWLLMVRKPFWLIFTNWSSIIFVSG*(+)
MMHLTCTNMPVEKIDDALTTIKSNGIQNVLALRGDPPHGQDKFVQVAGGFACALDLVQHIRAKY
GDYFGITVAGYPEAHPDAIQSTEGATPEAYSNDLAYLKQKVDAGADLIITQLFYDTDIFLKFVN
DCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGTEM
CKKILATGIKTLHLYTLNMEKSALGILMNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWAN
RPKSYISRTLGWDQYPHGRWGDSRNPSYGALTDYQFTRPRGRGKKLQEEWAVPVKSVEDINERF
MNFCQGKLTSSPWSELDGLQPETKIIDDQLVKINQKGFLTINSQPAVNGERSDSTSVGVCGNND
APDMHQYAS*(-)
MERDLIQQVLVCVETMMHLTCTNMPVEKIDDALTTIKSNGIQNVLALRGDPPHGQDKFVQVAGG
FACALDLVQHIRAKYGDYFGITVAGYPEAHPDAIQSTEGATPEAYSNDLAYLKQKVDAGADLII
TQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDN
EEAVKAYGIHLGTEMCKKILATGIKTLHLYTLNMEKSALGILMNLGLIEESKISRSLPWRPPTN
VFRVKEDVRPIFWANRPKSYISRTLGWDQYPHGRWGDSRNPSYGALTDYQFTRPRGRGKKLQEE
WAVPVKSVEDINERFMNFCQGKLTSSPWSELDGLQPETKIIDDQLVKINQKGFLTINSQPAVNG
ERSDSTSVGVCGNNDAPDMHQYAS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015