Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0815200_circ_g.2 |
ID in PlantcircBase | osa_circ_022425 |
Alias | Os_ciR4760 |
Organism | Oryza sativa |
Position | chr3: 34169343-34171665 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Os03g0815200 |
Parent gene annotation |
Similar to Methylenetetrahydrofolate reductase (EC 1.5.1.20). (O s03t0815200-01);Similar to Methylenetetrahydrofolate reductase. (Os03t0815200-02);Similar to Methylenetetrahydrofolate reductase . (Os03t0815200-03);Similar to Methylenetetrahydrofolate reducta se (Fragment). (Os03t0815200-04) |
Parent gene strand | - |
Alternative splicing | Os03g0815200_circ_g.3 Os03g0815200_circ_g.4 Os03g0815200_circ_g.5 Os03g0815200_circ_g.6 Os03g0815200_circ_g.7 Os03g0815200_circ_g.8 |
Support reads | 4 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os03t0815200-01:9 Os03t0815200-03:3 Os03t0815200-02:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.263731619 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
34171636-34169455(+) 34171652-34171618(-) 34169374-34171618(-) |
Potential amino acid sequence |
MSGASLFPHTPTLVESDLSPLTAGWLLMVRKPFWLIFTNWSSIIFVSG*(+) MMHLTCTNMPVEKIDDALTTIKSNGIQNVLALRGDPPHGQDKFVQVAGGFACALDLVQHIRAKY GDYFGITVAGYPEAHPDAIQSTEGATPEAYSNDLAYLKQKVDAGADLIITQLFYDTDIFLKFVN DCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGTEM CKKILATGIKTLHLYTLNMEKSALGILMNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWAN RPKSYISRTLGWDQYPHGRWGDSRNPSYGALTDYQFTRPRGRGKKLQEEWAVPVKSVEDINERF MNFCQGKLTSSPWSELDGLQPETKIIDDQLVKINQKGFLTINSQPAVNGERSDSTSVGVCGNND APDMHQYAS*(-) MERDLIQQVLVCVETMMHLTCTNMPVEKIDDALTTIKSNGIQNVLALRGDPPHGQDKFVQVAGG FACALDLVQHIRAKYGDYFGITVAGYPEAHPDAIQSTEGATPEAYSNDLAYLKQKVDAGADLII TQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDN EEAVKAYGIHLGTEMCKKILATGIKTLHLYTLNMEKSALGILMNLGLIEESKISRSLPWRPPTN VFRVKEDVRPIFWANRPKSYISRTLGWDQYPHGRWGDSRNPSYGALTDYQFTRPRGRGKKLQEE WAVPVKSVEDINERFMNFCQGKLTSSPWSELDGLQPETKIIDDQLVKINQKGFLTINSQPAVNG ERSDSTSVGVCGNNDAPDMHQYAS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |