Detail information of AT2G35880_circ_g.4


General Information
CircRNA Name AT2G35880_circ_g.4
ID in PlantcircBase ath_circ_016718
Alias 2:15064179-15064458
Organism Arabidpsis thaliana
Position chr2: 15064179-15064458  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G35880
Parent gene annotation Protein WVD2-like 4
Parent gene strand -
Alternative splicing AT2G35880_circ_g.1 AT2G35880_circ_g.2 AT2G35880_circ_g.3 AT2G35880_circ_g.5 AT2G35880_circ_g.6
Support reads 2
Tissues seedling
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G35880.3:2
AT2G35880.2:2
AT2G35880.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTAAAGAAAGAACTTACACAGCGGTGGTTGATCCAGCCTCCTCGACATCCTTCCCCGCAGTT
TCTTCTTTGATGGATTTAGAACCTTCATCTCCTAATgaagtggtagttgaacgagtgtcttcgt
cgtccttgcttgccatttcagctttcaacgggttagatactttatctgccaccctgtaaaatta
cagatgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAGTGGTAGTTGAACGAGTGTCTTCGTCGTCCTTGCTTGCCATTTCAGCTTTCAACGGGTTAG
ATACTTTATCTGCCACCCTGTAAAATTACAGATGCAAACACTTTTACATATGTTTTACTTCTGT
AATCTACAGCCACATTTTCACATTAAAAACTAACGGAAACATGCCAAAAACAAGGTAAAGAAAG
AACTTACACAGCGGTGGTTGATCCAGCCTCCTCGACATCCTTCCCCGCAGTTTCTTCTTTGATG
GATTTAGAACCTTCATCTCCTAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.153272738
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020