Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d012761_circ_g.3 |
ID in PlantcircBase | zma_circ_009827 |
Alias | zma_circ_0002938 |
Organism | Zea mays |
Position | chr8: 180177761-180179146 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d012761 |
Parent gene annotation |
Protein kinase family protein |
Parent gene strand | + |
Alternative splicing | Zm00001d012761_circ_g.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d012761_T006:6 Zm00001d012761_T002:6 Zm00001d012761_T001:6 Zm00001d012761_T004:6 Zm00001d012761_T003:6 Zm00001d012761_T005:6 Zm00001d012761_T008:5 Zm00001d012761_T007:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.300944185 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
180178008-180177778(+) 180179128-180177778(+) |
Potential amino acid sequence |
MATFPVSLCCFCPHPFRKFVEYVVNLKFDEEPDYAKCASLFHSVLSVVGSNPDVRPINTDGAQK LIHQFGQKRGRFFIEEEADEQPKKKIRVGMPATQWISVYNGRVPMKQRYHYNVSDSRVGQHIEK GNADGLFISCITSCSDLWALIMDAGTGFTSQIYELIPHFLHKEWVMDQWERDYYITAVAGANNG SSLVVMSKGTKYTQQSYKVSNSFPYKWINKKWQDGFYVTSMATAGSRWAVVMSHNAGFSNQGNI SLC*(+) MLGFLIRGTFRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGCLPWQGYQGDNKSFLVCKKKMA TFPVSLCCFCPHPFRKFVEYVVNLKFDEEPDYAKCASLFHSVLSVVGSNPDVRPINTDGAQKLI HQFGQKRGRFFIEEEADEQPKKKIRVGMPATQWISVYNGRVPMKQRYHYNVSDSRVGQHIEKGN ADGLFISCITSCSDLWALIMDAGTGFTSQIYELIPHFLHKEWVMDQWERDYYITAVAGANNGSS LVVMSKGTKYTQQSYKVSNSFPYKWINKKWQDGFYVTSMATAGSRWAVVMSHNAGFSNQGNISL C*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |