Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0547200_circ_g.2 |
ID in PlantcircBase | osa_circ_002111 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 20359456-20361748 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
Parent gene | Os01g0547200 |
Parent gene annotation |
Zinc finger, BED-type predicted domain containing protein. (Os01 t0547200-01) |
Parent gene strand | - |
Alternative splicing | Os01g0547200_circ_g.3 |
Support reads | 6 |
Tissues | seed |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os01t0547200-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_002125* |
PMCS | 0.124743767 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
20361540-20359596(+) 20361664-20359558(+) 20361699-20359458(-) 20359534-20361747(-) |
Potential amino acid sequence |
MLPYFFRDVSWNFWAHFDIQITSKMPLKSRDTTTISSQVTIHALPVLSVLVDHYAMLPSNVPTF PKCFSHLFVFRIISFIVHSLLLIIVKYLAPSMFQGAVLLRLIAAFHQLFTMVK*(+) MHFQCCLFSSIIMPCFHPMSLLFQNVSVTSLCSGLSVLLSIVCCLLLSSTWHLPCSKVQCSSG* (+) MIDENRQHWKCMYCHLTRYGGGVSRLKRHLAGDLDVKMCPKVPADVSEKIREHLRKKRERRKKR AAQNRDNCVTAKSTSDDIKSGKDPLPVDSEVLTGVDTVLEEVTNQTNHDNQDLTYPKATMLLRG IRDIGWEHAVDLDGNKRRWKCKWCSLCRSGGVTTLKAHLTDSSCPNIPKEISKKVLNFIEEKRA ARHLFNSAAKSPFNVKFDEDAVNLSEIQVEGTPPLTDDRQPLGNSLHIQTSECTINEFEKVAAG SNQQGAEHSNQLLNHGEQLMKSSDQPEEHCTLEHGRCQVLDNNKQQTMDNKTDNPEHKEVTETF WKSRDIGWKHGIMIDENRQHWKCMYCHLTRYGGGVSRLKRHLAGDLDVKMCPKVPADVSEKIRE HLRKKRERRKKRAAQNRDNCVTAKSTSDDIKSGKDPLPVDSEVLTGVDTVLEEVTNQTNHDNQD LTYPKATMLLRGIRDIGWEHAVDLDGNKRRWKCKWCSLCRSGGVTTLKAHLTDSSCPNIPKEIS KKVLNFIEEKRAARHLFNSAAKSPFNVKFDEDAVNLSEIQVEGTPPLTDDRQPLGNSLHIQTSE CTINEFEKVAAGSNQQGAEHSNQLLNHGEQLMKSSDQPEEHCTLEHGRCQVLDNNKQQTMDNKT DNPEHKEVTETFWKSRDIGWKHGIMIDENRQHWKCMYCHLTRYGGGVSRLKRHLAGDLDVKMCP KVPADVSEKIREHLRKKRERRKKRAAQNRDNCVTAKSTSDDIKSGKDPLPVDSEVLTGVDTVLE EVTNQTNHDNQDLTYPKATMLLRGIRDIGWEHAVDLDGNKRRWKCKWCSLCRSGGVTTLKAHLT DSSCPNIPKEISKKVLNFIEEKRAARHLFNSAAKSPFNVKFDEDAVNLSEIQVEGTPPLTDDRQ PLGNSLHIQTSECTINEFEKVAAGSNQQGAEHSNQLLNHGEQLMKSSDQPEEHCTLEHGRCQVL DNNKQQTMDNKTDNPEHKEVTETFWKSRDIGWKHGIMIDENRQHWKCMYCHLTRYGGGVSRLKR HLAGDLDVKMCPKVPADVSEKIREHLRKKRERRKKRAAQNRDNCVTAKSTSDDIKSGKDPLPVD SEVLTGVDTVLEEVTNQTNHDNQDLTYPKATMLLRGIRDIGWEHAVDLDGNKRRWKCKWCSLCR SGGVTTLKAHLTDSSCPNIPKEISKKVLNFIEEKRAARHLFNSAAKSPFNVKFDEDAVNLSEIQ VEGTPPLTDDRQPLGNSLHIQTSECTINEFEKVAAGSNQQGAEHSNQLLNHGEQLMKSSDQPEE HCTLEHGRCQVLDNNKQQTMDNKTDNPEHKE(-) MEGAKYLTIISSRLWTIKLIIRNTKR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |