Detail information of Os01g0547200_circ_g.2


General Information
CircRNA Name Os01g0547200_circ_g.2
ID in PlantcircBase osa_circ_002111
Alias NA
Organism Oryza sativa
Position chr1: 20359456-20361748  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene Os01g0547200
Parent gene annotation Zinc finger, BED-type predicted domain containing protein. (Os01
t0547200-01)
Parent gene strand -
Alternative splicing Os01g0547200_circ_g.3
Support reads 6
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0547200-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGGTGACAATACATGCACTTCCAGTGTTGTCTGTTCTCGTCGATCATTATGCCATGCTTCCA
TCCAATGTCCCTACTTTTCCAAAATGTTTCAGTCACctctttgtgttccggattatcagtttta
ttgtccatagtctgctgcttattattgtcaagtacttggcaccttccatgttccaaggtgcagt
gctcctca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 996
Transcript exons: 20359456-20359653,20360261-20360644,20361335-20361748
CTCTTTGTGTTCCGGATTATCAGTTTTATTGTCCATAGTCTGCTGCTTATTATTGTCAAGTACT
TGGCACCTTCCATGTTCCAAGGTGCAGTGCTCCTCAGGTTGATCGCTGCTTTTCATCAGCTGTT
CACCATGGTTAAGTAGTTGGTTGCTATGTTCTGCACCCTGTTGGTTGCTTCCAGCTGCCACCTT
TTCAAACTCATTAATGGTGCACTCTGATGTTTGTATATGCAAGGAATTTCCTAAAGGTTGTCGA
TCATCTGTCAATGGTGGAGTACCTTCCACCTGTATTTCTGAGAGATTAACTGCATCCTCGTCAA
ATTTGACATTGAAAGGAGATTTTGCAGCGCTATTAAAAAGATGGCGTGCTGCCCTTTTCTCTTC
AATAAAGTTCAACACTTTTTTTGATATTTCCTTAGGAATATTTGGGCAACTACTATCAGTAAGA
TGAGCCTTCAATGTAGTTACACCACCACTTCGACATAAAGAACACCACTTGCACTTCCATCGTC
TTTTATTTCCATCAAGATCCACTGCATGCTCCCACCCAATATCTCTTATCCCTCGTAACAACAT
GGTAGCCTTGGGATAAGTAAGATCCTGATTATCATGGTTCGTTTGGTTAGTAACTTCTTCAAGA
ACAGTGTCTACTCCAGTCAGCACCTCTGAATCAACGGGTAAAGGATCTTTGCCAGACTTGATAT
CATCAGAGGTGCTCTTAGCCGTCACACAGTTATCACGATTTTGTGCAGCTCGCTTCTTTCGCCT
TTCTCTTTTCTTCCGCAAATGCTCCCTTATTTTTTCAGAGACGTCAGCTGGAACTTTTGGGCAC
ATTTTGACATCCAGATCACCAGCAAGATGCCGCTTAAGTCTAGAGACACCACCACCATATCTAG
TCAGGTGACAATACATGCACTTCCAGTGTTGTCTGTTCTCGTCGATCATTATGCCATGCTTCCA
TCCAATGTCCCTACTTTTCCAAAATGTTTCAGTCAC

Genomic sequence CTCTTTGTGTTCCGGATTATCAGTTTTATTGTCCATAGTCTGCTGCTTATTATTGTCAAGTACT
TGGCACCTTCCATGTTCCAAGGTGCAGTGCTCCTCAGGTTGATCGCTGCTTTTCATCAGCTGTT
CACCATGGTTAAGTAGTTGGTTGCTATGTTCTGCACCCTGTTGGTTGCTTCCAGCTGCCACCTT
TTCAAACTAAGTAAACCAAAATATGCAAGTAAGTTCCAATGCTAGAAAAACATTTGTCCAAAGA
AGTGAGACAGCTATGGTACATTCTGAAGAAAGTGGGTGTGTCTGGTTTTATCCCCTTCTCGGTG
TTTAACTTGCATGAAATTTCAAGTGTAGGTCTCCAGAAGTTATTAGAAAATTGGCTAAATGTAA
TGAGGATCATTTCTCTATGGCCCTGAAGCAAGATAAAGTAATTACAGTTGTATGGGATCCACAA
AGATGTCTTGAGAACAATTTTAACTGTTTTGGCTCTATTTATCTTGCCTGTCAAATTCCATATC
TTTTATTGCGTCAATAATGAATATTTCCACTCAAATCAGTATTAACATAGGAAATGGTGGGTGC
CCTAACAGAATATGAAGCCAGTGGCAACCCTCATTGACTTGAGATGGATGTTTGCATTATGAGT
GGATGTTTCAATACTGTGCAAGGTGTGATTATCGGTGAACAACTGATAATCACTGCCTTGGGCT
GTGATGAATCTGAAATAAATTTACTGCATCTAAAGTAACATACTCAATAAGGGAGGGAACACCC
TAAAGAAAAGGATATGGGATGAATAAGACCATAATACCTCATTAATGGTGCACTCTGATGTTTG
TATATGCAAGGAATTTCCTAAAGGTTGTCGATCATCTGTCAATGGTGGAGTACCTTCCACCTGT
ATTTCTGAGAGATTAACTGCATCCTCGTCAAATTTGACATTGAAAGGAGATTTTGCAGCGCTAT
TAAAAAGATGGCGTGCTGCCCTTTTCTCTTCAATAAAGTTCAACACTTTTTTTGATATTTCCTT
AGGAATATTTGGGCAACTACTATCAGTAAGATGAGCCTTCAATGTAGTTACACCACCACTTCGA
CATAAAGAACACCACTTGCACTTCCATCGTCTTTTATTTCCATCAAGATCCACTGCATGCTCCC
ACCCAATATCTCTTATCCCTCGTAACAACATGGTAGCCTGCAAATCAATGTAAACTTTGAATTT
GAATCCATACAATATAATTGGTAGTTTATTACTGCTCAGAATAAACCAAAAAAATGTAGGATAT
AAATATTTAGTGAACAATTACAGTACTAGGGCACAAGTTACGTGTGAAAGGTTTATAGTTAGCA
GTTAATGACATGTGATTTTGCTAGTCTTTAAGGATAATAAGTTAAGAATTCACAAAGTCAAGAG
ATATGAACTCATACTTTAGTGACTATGTTGTTTTCACACATGATGGCCTTGCAGTCTCTATGAA
ATTATTTTTCTAAGTTCACTTTTCAGGGATCAAATATCTTTGCTATGACAGCTGCATAAGTACT
AGATTTTGCTGAATTAACTACTCCGTCCGTTTCACAATGTAAGACTTTCTAGCATTATCCACAC
TCATATAGATGTTAATGAATCTAGATGCACATATGAATATAGATTCATTAGTATCTATATGAAT
GTGGGCGATGCTAGAAAGTCTCACATTGTGAAACGGAGGAAGTACATAAGTTAGTAGGTACTGA
AGCATATACATAATACATTTCAAGTCCACAGGTGTATGATTGCTTACACTAATCAAACAGATGG
CAACTAAAATACTCCAGATGATGTTTTTTGTAGAGATCACACTGAGTAGAAAATGAAATAGAGA
AAAAAAAGTACCACTTTGTATACCTTGGGATAAGTAAGATCCTGATTATCATGGTTCGTTTGGT
TAGTAACTTCTTCAAGAACAGTGTCTACTCCAGTCAGCACCTCTGAATCAACGGGTAAAGGATC
TTTGCCAGACTTGATATCATCAGAGGTGCTCTTAGCCGTCACACAGTTATCACGATTTTGTGCA
GCTCGCTTCTTTCGCCTTTCTCTTTTCTTCCGCAAATGCTCCCTTATTTTTTCAGAGACGTCAG
CTGGAACTTTTGGGCACATTTTGACATCCAGATCACCAGCAAGATGCCGCTTAAGTCTAGAGAC
ACCACCACCATATCTAGTCAGGTGACAATACATGCACTTCCAGTGTTGTCTGTTCTCGTCGATC
ATTATGCCATGCTTCCATCCAATGTCCCTACTTTTCCAAAATGTTTCAGTCAC
Conservation Information
Conserved circRNAs osi_circ_002125*
PMCS 0.124743767
Functional Information
Coding potential Y
Potential coding position 20361540-20359596(+)
20361664-20359558(+)
20361699-20359458(-)
20359534-20361747(-)
Potential amino acid sequence MLPYFFRDVSWNFWAHFDIQITSKMPLKSRDTTTISSQVTIHALPVLSVLVDHYAMLPSNVPTF
PKCFSHLFVFRIISFIVHSLLLIIVKYLAPSMFQGAVLLRLIAAFHQLFTMVK*(+)
MHFQCCLFSSIIMPCFHPMSLLFQNVSVTSLCSGLSVLLSIVCCLLLSSTWHLPCSKVQCSSG*
(+)
MIDENRQHWKCMYCHLTRYGGGVSRLKRHLAGDLDVKMCPKVPADVSEKIREHLRKKRERRKKR
AAQNRDNCVTAKSTSDDIKSGKDPLPVDSEVLTGVDTVLEEVTNQTNHDNQDLTYPKATMLLRG
IRDIGWEHAVDLDGNKRRWKCKWCSLCRSGGVTTLKAHLTDSSCPNIPKEISKKVLNFIEEKRA
ARHLFNSAAKSPFNVKFDEDAVNLSEIQVEGTPPLTDDRQPLGNSLHIQTSECTINEFEKVAAG
SNQQGAEHSNQLLNHGEQLMKSSDQPEEHCTLEHGRCQVLDNNKQQTMDNKTDNPEHKEVTETF
WKSRDIGWKHGIMIDENRQHWKCMYCHLTRYGGGVSRLKRHLAGDLDVKMCPKVPADVSEKIRE
HLRKKRERRKKRAAQNRDNCVTAKSTSDDIKSGKDPLPVDSEVLTGVDTVLEEVTNQTNHDNQD
LTYPKATMLLRGIRDIGWEHAVDLDGNKRRWKCKWCSLCRSGGVTTLKAHLTDSSCPNIPKEIS
KKVLNFIEEKRAARHLFNSAAKSPFNVKFDEDAVNLSEIQVEGTPPLTDDRQPLGNSLHIQTSE
CTINEFEKVAAGSNQQGAEHSNQLLNHGEQLMKSSDQPEEHCTLEHGRCQVLDNNKQQTMDNKT
DNPEHKEVTETFWKSRDIGWKHGIMIDENRQHWKCMYCHLTRYGGGVSRLKRHLAGDLDVKMCP
KVPADVSEKIREHLRKKRERRKKRAAQNRDNCVTAKSTSDDIKSGKDPLPVDSEVLTGVDTVLE
EVTNQTNHDNQDLTYPKATMLLRGIRDIGWEHAVDLDGNKRRWKCKWCSLCRSGGVTTLKAHLT
DSSCPNIPKEISKKVLNFIEEKRAARHLFNSAAKSPFNVKFDEDAVNLSEIQVEGTPPLTDDRQ
PLGNSLHIQTSECTINEFEKVAAGSNQQGAEHSNQLLNHGEQLMKSSDQPEEHCTLEHGRCQVL
DNNKQQTMDNKTDNPEHKEVTETFWKSRDIGWKHGIMIDENRQHWKCMYCHLTRYGGGVSRLKR
HLAGDLDVKMCPKVPADVSEKIREHLRKKRERRKKRAAQNRDNCVTAKSTSDDIKSGKDPLPVD
SEVLTGVDTVLEEVTNQTNHDNQDLTYPKATMLLRGIRDIGWEHAVDLDGNKRRWKCKWCSLCR
SGGVTTLKAHLTDSSCPNIPKEISKKVLNFIEEKRAARHLFNSAAKSPFNVKFDEDAVNLSEIQ
VEGTPPLTDDRQPLGNSLHIQTSECTINEFEKVAAGSNQQGAEHSNQLLNHGEQLMKSSDQPEE
HCTLEHGRCQVLDNNKQQTMDNKTDNPEHKE(-)
MEGAKYLTIISSRLWTIKLIIRNTKR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017