Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os01g0547200_circ_g.2 |
| ID in PlantcircBase | osa_circ_002111 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr1: 20359456-20361748 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
| Parent gene | Os01g0547200 |
| Parent gene annotation |
Zinc finger, BED-type predicted domain containing protein. (Os01 t0547200-01) |
| Parent gene strand | - |
| Alternative splicing | Os01g0547200_circ_g.3 |
| Support reads | 6 |
| Tissues | seed |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os01t0547200-01:3 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | osi_circ_002125* |
| PMCS | 0.124743767 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
20361540-20359596(+) 20361664-20359558(+) 20361699-20359458(-) 20359534-20361747(-) |
| Potential amino acid sequence |
MLPYFFRDVSWNFWAHFDIQITSKMPLKSRDTTTISSQVTIHALPVLSVLVDHYAMLPSNVPTF PKCFSHLFVFRIISFIVHSLLLIIVKYLAPSMFQGAVLLRLIAAFHQLFTMVK*(+) MHFQCCLFSSIIMPCFHPMSLLFQNVSVTSLCSGLSVLLSIVCCLLLSSTWHLPCSKVQCSSG* (+) MIDENRQHWKCMYCHLTRYGGGVSRLKRHLAGDLDVKMCPKVPADVSEKIREHLRKKRERRKKR AAQNRDNCVTAKSTSDDIKSGKDPLPVDSEVLTGVDTVLEEVTNQTNHDNQDLTYPKATMLLRG IRDIGWEHAVDLDGNKRRWKCKWCSLCRSGGVTTLKAHLTDSSCPNIPKEISKKVLNFIEEKRA ARHLFNSAAKSPFNVKFDEDAVNLSEIQVEGTPPLTDDRQPLGNSLHIQTSECTINEFEKVAAG SNQQGAEHSNQLLNHGEQLMKSSDQPEEHCTLEHGRCQVLDNNKQQTMDNKTDNPEHKEVTETF WKSRDIGWKHGIMIDENRQHWKCMYCHLTRYGGGVSRLKRHLAGDLDVKMCPKVPADVSEKIRE HLRKKRERRKKRAAQNRDNCVTAKSTSDDIKSGKDPLPVDSEVLTGVDTVLEEVTNQTNHDNQD LTYPKATMLLRGIRDIGWEHAVDLDGNKRRWKCKWCSLCRSGGVTTLKAHLTDSSCPNIPKEIS KKVLNFIEEKRAARHLFNSAAKSPFNVKFDEDAVNLSEIQVEGTPPLTDDRQPLGNSLHIQTSE CTINEFEKVAAGSNQQGAEHSNQLLNHGEQLMKSSDQPEEHCTLEHGRCQVLDNNKQQTMDNKT DNPEHKEVTETFWKSRDIGWKHGIMIDENRQHWKCMYCHLTRYGGGVSRLKRHLAGDLDVKMCP KVPADVSEKIREHLRKKRERRKKRAAQNRDNCVTAKSTSDDIKSGKDPLPVDSEVLTGVDTVLE EVTNQTNHDNQDLTYPKATMLLRGIRDIGWEHAVDLDGNKRRWKCKWCSLCRSGGVTTLKAHLT DSSCPNIPKEISKKVLNFIEEKRAARHLFNSAAKSPFNVKFDEDAVNLSEIQVEGTPPLTDDRQ PLGNSLHIQTSECTINEFEKVAAGSNQQGAEHSNQLLNHGEQLMKSSDQPEEHCTLEHGRCQVL DNNKQQTMDNKTDNPEHKEVTETFWKSRDIGWKHGIMIDENRQHWKCMYCHLTRYGGGVSRLKR HLAGDLDVKMCPKVPADVSEKIREHLRKKRERRKKRAAQNRDNCVTAKSTSDDIKSGKDPLPVD SEVLTGVDTVLEEVTNQTNHDNQDLTYPKATMLLRGIRDIGWEHAVDLDGNKRRWKCKWCSLCR SGGVTTLKAHLTDSSCPNIPKEISKKVLNFIEEKRAARHLFNSAAKSPFNVKFDEDAVNLSEIQ VEGTPPLTDDRQPLGNSLHIQTSECTINEFEKVAAGSNQQGAEHSNQLLNHGEQLMKSSDQPEE HCTLEHGRCQVLDNNKQQTMDNKTDNPEHKE(-) MEGAKYLTIISSRLWTIKLIIRNTKR*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |