Detail information of BGIOSGA034317_circ_g.1


General Information
CircRNA Name BGIOSGA034317_circ_g.1
ID in PlantcircBase osi_circ_003066
Alias 11:5152907|5154328
Organism Oryza sativa ssp. indica
Position chr11: 5152907-5154328  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA034317
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034317_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA034317-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCGTATCAGGAATAGTCTCAATTAGCGCTGTATATGCAGATGTGACGATAACTTCATAGGGTC
GCAACCAAAGTGGTAAACCAGCTTCTTGATATATATttcaagaagctcccttgtcagtttaaat
ggtgcactttcaaaattaacccctccaggagagttggaaagcataaagccaaaatcaatatgaa
ttatatgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCAAGAAGCTCCCTTGTCAGTTTAAATGGTGCACTTTCAAAATTAACCCCTCCAGGAGAGTTG
GAAAGCATAAAGCCAAAATCAATATGAATTATATGCCCTTCCTCATCTATCAAGAGATTTCCAT
TGTGACGATCCTTGACCTGCAATATTTTAACAAAATAAAATTCAGCGATTATTTAGGCCCAATC
ATGATGACAAAAAAGAGTATAGCACTCACAATCGCAAAGTTAATTTATTTCTATATAATAAATG
AAATATTTGATGAAAAATAAGAACAGCATCAAACAGCCTTTTTAAATTTTGGAAGTGCTACAAG
TATAGTTGTGTATTGCAAGTTACAGAAGTTCAATTGAAACTTTAAAGTAATCTTATGAAAATGT
TGCAGCACAATAATTGCACTGCAAATTCCATTCGAAATGGTCTCGAACTTCCAGCAAATTAAAT
ATCCAGTCACACAGGTCACTACTCACTAGTTTCCCCCTTTACACTTTAACATAAAGGCTAGAAA
ACTTTCTTTATCAGTAAACTTTGGCTGGCCCTCAAACCTTTTGTACTTTTAATAACATTCCACA
AAGAATCTGTATAAACTGGAACCATTGGATGCTCTGCTGGCCCAATCAAACCTCAGAAAAATGA
TGGGAGATTTACAGGACAAAGCAGAAGATCAATAGATCTGTAATCTGTTCTAGTAGTGCACAGT
TCATTAGTAGCTAAATTCAAAATACAAGGGGTCCAGAAGGTAAGCCACTGTCATTTGTTGAGAT
GGCCCCACAGAACAATAACAAAATGATCTCCAGAATTTGAGAAATATTATAGAATAATAATTGC
AAACCTAGATGTATCACGCATATAAACTATGATATTTGGTTTTAATACCTGGAGCAGGTAGCAC
AGGATTGAGTATCCAGCCATGCTTTCCACAAAGTTTCTCTGTTAGTAACACAAAATAAATCAAT
AAGCGGTTCAAATACATTGTTACTAGTGTGAACTGTTTTTATGATTCGTTTAGTGGACACTATT
GGCTAGTGCCTTAAAGTGGTTTAAACTGAAACATGACATTAAAACCAGCCAATCAGCTGTTGTG
AACCATATCTCTGAGCCACAGAACAGTCAAACTCTACCTGGGCAAGTTTGAAGTTCGGAGAATT
TTCTTCATACTTGGCTACATAGTAGTCACGGAGACTTGTGATATCGGGGAACCGACTCTTGATG
GAATGAATTGACGCCTGCAGTAGCATGACAAAAAAAGGCCAAGCTAATAACTTTCAGTATGCAC
AGAAATTCAGAAAGCTAACTTAATCATAATGGAGAGATGACTACCGTATCAGGAATAGTCTCAA
TTAGCGCTGTATATGCAGATGTGACGATAACTTCATAGGGTCGCAACCAAAGTGGTAAACCAGC
TTCTTGATATATAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 5153824-5154253(-)
Potential amino acid sequence MAGYSILCYLLQVKDRHNGNLLIDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEIYIK
KLVYHFGCDPMKLSSHLHIQR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021