Detail information of Os10g0546200_circ_g.1


General Information
CircRNA Name Os10g0546200_circ_g.1
ID in PlantcircBase osa_circ_007892
Alias NA
Organism Oryza sativa
Position chr10: 21341632-21345455  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os10g0546200
Parent gene annotation Glycosyl transferase, family 1 domain containing protein. (Os10t
0546200-00)
Parent gene strand +
Alternative splicing Os10g0546200_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0546200-00:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTGAATTTGGTGCTATGTTTGCCGTTGCGAACAGAATCGATGCTGTTCACAAGTTACCATGG
ATAGGTTTCCAGTCATGGCAGGCTGCTGGAAGAAAGtttgtgggaaccatgaacataaatgcac
agtccctgatggttgctactttggcaaaaagtcttaagaatctgggttacgaggttgaggtgag
ttgctttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTGTGGGAACCATGAACATAAATGCACAGTCCCTGATGGTTGCTACTTTGGCAAAAAGTCTTA
AGAATCTGGGTTACGAGGTTGAGGTGAGTTGCTTTGCTAAAATGGTCATTGAATAGCGTACTAG
AAATTGTGTTGCCATTTTTAACATGTGACTGTTTGGCGGTCATTATCGTACTCCAACTCCTATA
TGTTAAGCACCATACAAAAGGAAATGCTTGTGTCAATAACACTTCTTGTTCCAGTAATTCATTC
AGTTGCTATGGAACAGGTTTTAGCATTTGCGGATGGGAAAGCTAACGATATTTTGGAAAATATT
TGTCATGTAAATGTTGTCAGCCCTCCGAGCTTGAAGTACATTGATTGGTCAAAGTAAGTGCTGG
AAACTTACAATAGGATATTTTGCTTTTGCTTTTACTTGATTTGGTTTAAGATTTTGACTTCTAT
TTGATTTTACAGATACAATGCTGTGCTTCTAAGCTCTCTGGAAGGGAAAATGGTCGTTTCAATG
TGAGTGTTAATTTTAACCTACCTATCTTCAACTGCTTGGATACTTACGTAGTTGTGTTCTCTGC
TACTTCATGCCTTGCTATTTAGTAAAAATAGCATAGGAGGATATAGAAGGACAACAGCCCACTC
TTTTATTGCCCCTTTAACTACCAGTACCATATGATCTTATCCAATGTTAAGTATTAACCCACCA
TTTGCAAATGCTAGTAACTGTCATACACCGGTTCTACAAAATATCAGCTAATTTAGTTTAATGC
GGCATTTATGGACTGTTGATTCCGTTCAGTTGATTTTTTTGTTATCAGAAGTTGAAATATTAAA
TCTAGAGAACAGTTAGACCTACTTCTGTATAGTCATGTAGGGTCTTGTATTCTTCTTCCCATTC
TATCTTGTATTGCTGTTTGTTTTATAAAACTGGAACTTTCTTTTGGCATCATTTCTATTTGACT
GTTGAGTGTTGAGCAGCTATAACGTTTCAGAACTAAGTTTTCCCAAAATAGTATAAATTCGGTT
ATGACAAAAGATCCAATTTGTATGGAAAGGACAGGTGTTATTATATTGTTCCTAGTTTTCCATC
CCAAGTGTTTCTTTTCCCTTTATCACATCATTTGTTCGGTCTGCAGTGCTGCACATTCATATCG
TGTTCAGTCTTATGCAGGAACCTTTCCAATTTCTACCTGTGGTCTGGCTTATTCATGAAGATGC
TCTTGGGCAGTTCCTTAGAAATCCCGAACTGCACCAGTCCATTCCTAATCATATTGAAGATTGG
AGAACTCATTTTAATGCATGCACTTATGTCGTGTTTCCAGATAGCTACCTTCCTGTACGTGTGA
CTGTCAGTTTTAGATTCTGGAATAATTAAATCAAGAAGAAACATTTGCTTCTCTGACTCTTAAA
TATCTTATTTCAGTTGTTACATTCGGCCCTTGATACTGGGAACTTCTTGGTTATTTCTGGTTCA
CCAGTTGATATCTTGGCAACAAAAAGATACAGCTCATCACATACTCAAGAAAGTGCAAGGAATC
AGTATGGGAGCAAAGAAGATGATGTTGTTGTTTTGGTTGTTGGGAGCTACCTGTTCTTTGATGA
ATTACCATGGGATTTTGCAACAGTTTTGCGTGCATCAGCCCCACACATTATGGACATGGCAAAA
ACTAAAAATTTGGGTGTGCAATTCATTTTTTTCTGCGGAAATGACACTGACGCCTATAACTCTG
CTTTCCAGGTAATAATTATTCGCTAGTTTCAAACTTTCTATCAAGATCCATTGGGGAAGCCCTT
GTGTCACTGTGATTTGCCATCTGGAGAACATACCTGAGATTCCTTATGTTTTTCTTCAGAAAAC
AACAATTTCTATTCAACAGCATTTGAACTGCTAGGTATCGTAGCATGTTAGACTAGGGAGGTTT
GATGACTGGTGTTAGGTCATGAATATGTGCTCTATTTTATTTCCATAAATATGTGCTGTCTCTG
GTTGGTAGTAAATGTTTTTCCCTCACCATTTGGCTTCACTGACCATCTTAATTTCTTCTGCAGG
AACTTGCTTCTCATATGGGATTTCCTCTTGGTTCCGTAAAGCATTTCTCCCTGACTCATGATAT
TAGGAATCTGTTAGTGTTTGCTGATATTGTTCTCTATGGTTCTTCAAGACAAGAACCTGTTTTC
CCTCCTTTGCTATTGCGGTCCATGGCCTCTGAAATTCCCATCATTGTGCCAAATCTAACTGTTA
TAACAAAATATGTATGTCTCTTCATCCAGTCCATGAGCTGTTATTTGTTTTGCCAATGTTTGAA
TGATTCTTCTATGTTTAACAATATATCATTGTTTTCAGATCACTGATGGCACCCATGGCTTCCT
TTTTAATGCTGATGACCCAAGCACAATGGTTTCAGCTTTTGCACAAATTTTAGGAGAAAAAAGG
CTTTCAGCTAGAGCCTTTTCTGTTGCTCTGGAGGGGAAGCTGCTTTCCAAAAACATGTTAGCTT
ATGATTGTATTACTGCTCATGTTATGCTTCTTGAGAGTGTGTTGCATTATCCTTCCTACGCTAA
ACTACCATCTCCTGTTTCTAAACTTCAAGAGAGAACATGGTTATGGGATCTTTTCGAGACAAAA
GCCGCACTAGAAAATAGTTCTTCAGACGATGACAGCCAACTCCTCACAAGGATAATTGATAATC
TTGTCGATGAATCTCACGAAAGTAACCAAACCTATTCTGATAGCAATGATACTTCCTTATATAA
CTACCCTAGCCTATCTGACTGGAATGATCTAAATGAAGTTGAAATCTTTGAAGACATTGAGAGG
AGGGAAATTGAGGAGGCCAGTTTTTCCCCCCTTCCTTTTCCTGTTTTCACATAATCTCTATATT
CTTCTTGAACAATACTAATTACTAGTGTTATAAAAAGAATCAAATTTATATTTTGCAATACAGA
TTGATGAAAGGGTGGAAAGACCTTTATTATCATGGGATGAGGTATACAAAAATGCCCGAAAATC
AGAAAGACTAAAGCCTGAAGGAAACGAGCGTGATGAAGGTGAACTGGAAAGGACTGGGCAACCT
GTGTGTATATATGAGATTTACAGTGGAGAAGGGGCATGGCCATTTTTACACCATGGTTCTCTAT
ATCGTGGCATTACTCTTGTAAGTTTTTTCTCGAACAATTAGTCTTGTAAGTTTGGTTTAAAATA
TACCTGTTTTTAGTTGTATGTTGAACCTCTAATTCAATTGAAAAGGTGCAGATCAGTTTCAATT
TTATGTTCGAACTCAATTTTATACACAGAACTTATTTTCCATCATTGACACCATAAATTGGTCA
GTTAGGTCATAGCTGTACGGTAAGGAAAATTCTGGAATGCCACAATATTTTACCTGTAGTTTTT
ACATGATGTGTCATACCCCTCCTGGCTTACTCTATCTGTACCGTTGAATCTGCACTTGTTAAGT
CCACTTGTTTGAAACTCATGGTCACTATGCGCCAAGAAAAAAGAAAAGAGTTGATTGCCACTGT
TAGTGCCACTAGCAATTAACTTCTCTGCATGTTACTCTGTTCTTATATTCTTTTATGTTGATAG
TTAAGGATTTGGTCACCACTTATGTTTGTTTTTTCATGCATTTTGTGTCAGTCAAAAGGAGGTA
GGAGACCCAGATCAGATGATGTGGATGCCGTAACTCATCTTTCAGTTCTGGACAATCCATATTA
CTCAGATCGTCTTTGTGAATTTGGTGCTATGTTTGCCGTTGCGAACAGAATCGATGCTGTTCAC
AAGTTACCATGGATAGGTTTCCAGTCATGGCAGGCTGCTGGAAGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.136893931
Functional Information
Coding potential Y
Potential coding position 21345417-21341693(+)
21344417-21344576(+)
21341653-21345406(-)
Potential amino acid sequence MDRFPVMAGCWKKVCGNHEHKCTVPDGCYFGKKS*(+)
MKLKSLKTLRGGKLRRPIDERVERPLLSWDEVYKNARKSERLKPEGNERDEGELERTGQPVCIY
EIYSGEGAWPFLHHGSLYRGITLSKGGRRPRSDDVDAVTHLSVLDNPYYSDRLCEFGAMFAVAN
RIDAVHKLPWIGFQSWQAAGRKFVGTMNINAQSLMVATLAKSLKNLGYEVEVLAFADGKANDIL
ENICHVNVVSPPSLKYIDWSKYNAVLLSSLEGKMVVSILMQEPFQFLPVVWLIHEDALGQFLRN
PELHQSIPNHIEDWRTHFNACTYVVFPDSYLPLLHSALDTGNFLVISGSPVDILATKRYSSSHT
QESARNQYGSKEDDVVVLVVGSYLFFDELPWDFATVLRASAPHIMDMAKTKNLGVQFIFFCGND
TDAYNSAFQELASHMGFPLGSVKHFSLTHDIRNLLVFADIVLYGSSRQEPVFPPLLLRSMASEI
PIIVPNLTVITKYITDGTHGFLFNADDPSTMVSAFAQILGEKRLSARAFSVALEGKLLSKNMLA
YDCITAHVMLLESVLHYPSYAKLPSPVSKLQERTWLWDLFETKAALENSSSDDDSQLLTRIIDN
LVDESHESNQTYSDSNDTSLYNYPSLSDWNDLNEVEIFEDIERREIEEAN*(+)
MFMVPTNFLPAACHDWKPIHGNL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017