Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os10g0546200_circ_g.1 |
| ID in PlantcircBase | osa_circ_007892 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr10: 21341632-21345455 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | ue-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os10g0546200 |
| Parent gene annotation |
Glycosyl transferase, family 1 domain containing protein. (Os10t 0546200-00) |
| Parent gene strand | + |
| Alternative splicing | Os10g0546200_circ_g.2 |
| Support reads | 1 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os10t0546200-00:9 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.136893931 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
21345417-21341693(+) 21344417-21344576(+) 21341653-21345406(-) |
| Potential amino acid sequence |
MDRFPVMAGCWKKVCGNHEHKCTVPDGCYFGKKS*(+) MKLKSLKTLRGGKLRRPIDERVERPLLSWDEVYKNARKSERLKPEGNERDEGELERTGQPVCIY EIYSGEGAWPFLHHGSLYRGITLSKGGRRPRSDDVDAVTHLSVLDNPYYSDRLCEFGAMFAVAN RIDAVHKLPWIGFQSWQAAGRKFVGTMNINAQSLMVATLAKSLKNLGYEVEVLAFADGKANDIL ENICHVNVVSPPSLKYIDWSKYNAVLLSSLEGKMVVSILMQEPFQFLPVVWLIHEDALGQFLRN PELHQSIPNHIEDWRTHFNACTYVVFPDSYLPLLHSALDTGNFLVISGSPVDILATKRYSSSHT QESARNQYGSKEDDVVVLVVGSYLFFDELPWDFATVLRASAPHIMDMAKTKNLGVQFIFFCGND TDAYNSAFQELASHMGFPLGSVKHFSLTHDIRNLLVFADIVLYGSSRQEPVFPPLLLRSMASEI PIIVPNLTVITKYITDGTHGFLFNADDPSTMVSAFAQILGEKRLSARAFSVALEGKLLSKNMLA YDCITAHVMLLESVLHYPSYAKLPSPVSKLQERTWLWDLFETKAALENSSSDDDSQLLTRIIDN LVDESHESNQTYSDSNDTSLYNYPSLSDWNDLNEVEIFEDIERREIEEAN*(+) MFMVPTNFLPAACHDWKPIHGNL*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |