Detail information of Os05g0384800_circ_g.3


General Information
CircRNA Name Os05g0384800_circ_g.3
ID in PlantcircBase osa_circ_027715
Alias NA
Organism Oryza sativa
Position chr5: 18588774-18593798  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene Os05g0384800
Parent gene annotation Similar to Chromosome condensation regulator protein (Fragment).
(Os05t0384800-01)
Parent gene strand -
Alternative splicing Os05g0384800_circ_g.2 Os05g0384800_circ_g.4
Support reads 3
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os05t0384800-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAACAAAACTCACATTGGAAAGCCTAAATGGGCAAAATTTTGGCTTCCCTCTGCGCCCGTACTT
CAGCAAGTATGCTCCTTTCTTGAGAGCAGTGATGGCctgaaccggaccctcttgagatctcgag
tccctccaggtagggcagtaagagtgatatacacccctggttcatcttgctctacccattcaga
ttcatgct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 3065
Transcript exons: 18588774-18589132,18589550-18589696,18590095-18592200,18
592546-18592740,18592875-18592955,18593527-18593616,1859
3712-18593798
CTGAACCGGACCCTCTTGAGATCTCGAGTCCCTCCAGGTAGGGCAGTAAGAGTGATATACACCC
CTGGTTCATCTTGCTCTACCCATTCAGATTCATGCTTAGAATCTGAATCGGGTAGCCTTGTTCC
ATTCTTGGGAATTTCAGGGTGACTCAACTTATTTCTAACTGAAGTTGGTCCATTGGAAACAAGC
AAACCATTAGAACCGTTTGAACAGGGTTCTCCAGAACTTCTTGGGCTACCCAAACTCTCAGATG
CAACTGATATATCAGTTGGAATAGAAATTCCTGGCAGCGGTGGCAGTCTGCTGTTCTTCACCAG
TCCTGCTCCTTCAGGTAGCTTCTCTGCCATGCCCTTCAACTGTGCAGTTAATGATTTGATAACT
TCCTTTGCAGCTTTGCACTTCGCAGTTTCCTCCCCTGCAATTGAAATAGCTTCCTTCAACTGTT
TAGTTGTTCTCTCCAAATCAGCTTCCAGTAGCTGAGACTTGCGAGTAAGATTTTCCACCTGAGA
CCTCAAACTTAGAACCTCTTGGCTTATGCTATCATTTGGCTTCACACCATCCACCACTCTAGGA
GAGGTTAGACCACCCAAAGTAGGTGTTGGAGTTGTGGATCGAGGAGGGCTTGCTCTTCTTGAAA
CAGGTGATGTTGCCCTTGAAACAATTCTAGATCCAGGAACTGATGCTGAAAAAAATTTCTTTGA
TGAACCAAAGGATTTTGAGATGTTGAGCCCACTCCAATGAGAACTGCCATTTGGAATAGGGGAA
ACACGACTGCTATTGAACTCAAACTTCTTGTTTTTCTTCGAAGTTCTGCTATCCATGTGCTTGA
AGGATTCCAATGATGACAATCTCGACAACTGGGCATTTGATTTTGTCTCCAACTCCTCGTCAAC
AGAATCATTGAACCCCTGTATAACAGATCCCCGCTTTGCTGAAGAATATCTATCTGTCTCAGGA
CCCTTATTCAGCTTGCTGTAGCAGCTATCACATACGCGATAAGGCTTGTTTGGGTTTGGTGCTA
ATGAAGCTTTCAGAGATTTCTTACTGCTGCAGGCATGACAAAATACAAGTGCACAATTGTAGCA
ATTATGACGTTTTCTCCTTAGATTAAATGGCAACCGACACCCAGAACACATGGACTGATCAACT
CCAGAAACCCACTTGTGAATGCATATTGCTGCAGTGAAGTTAATCCCGCAAACAACAGTTCTGA
CTTGCTTATCTTTCAGAGCTTCAACCAAAGTAGGAGAACTCCTATCGTCCGTATCTCCATGTCC
TAACCGACCATTCGCACCTTTACCCCATGTGTACACCTCAGTCCTTGAAGTCAAGACAGCGACA
TGATAAGCACCACATGAGATCTCCTCCACAAAGTTTTTATGTAGCTTCCCTTCAACACGCACAG
GAAGCATGCCATCTGCTTGTGGATTTCCAAGCTGGCCATAGACAGGACTTCCCATTGTATATAC
ATGCCCAGAGGTAGTCAGCGCCACCGTCATACAGTGACCACAAGCTATTTGACAAAAGTTAGGC
TCGACCAAAGCAGCTACACATGTTGGGACAAGTCTTGTATCTTTGTCACCATGTCCTAAACGGC
CTTTATCACCATCACCCCATGTAAAAATCTTACCAGAAGAACAGTTGCTAGAACTAGAATTGCC
GACCATAACTTCAACAACAGCAGCAGTGTGCCAAACACCACAAGCTGCTCGAACAGTCCGTAGC
CCTTTAAGGGATTCCACTTCTCTAGGGACTGAAAGACTCTGTCGATCTCCATGACCTAGAACTC
CAAAAGATCCATCTCCAAATGTGAATAGCTGTCCTGCAGAAGTTACTATAGCCGTGTGCCAGGG
GCCACATGAAATTGCTGAAACATGTATGCCCTCTAATGGTCCATTGACCCTTTTGGGTACCCAG
TGACTGACTTCATTCCCGTGGCCTAAAAGCCCAGAATTGGAAGTACCATTTCCCCAAGTGTACA
GATCCCCAGAGAGCGTAACTGCACAAGTGTGGTACTCACCACATGCTACTAGCTCAATGTTCAT
ATTAGCAAGAGCATCAATAAGCTTTGGCTGGGGCACATCACAATCTACACCATGACCAAGACGT
CCGCCTGATTCCTCACCCCAAGAGTAGATCTCTCCCTGCTTGGTAACAAGTGTGGCATGCCTTC
CCCCACAAGAAATGTTCTGTACATCAAGTTTTACAGCAAATTCCAATGGCTTTGGTATAAGACA
ATCCATGTTTACACCTGAGGAGTTCCCAACTCTCGAATTGCCACCACCAAGAATCCCCTCCCCA
GTCCCCTCTCCCCATATGAAAACATCACCTAGGGCATCACCATCATCATGACCAGAACCATGAC
TTGATGAACTAACAGCACTGGATAAACTAACACGGAAAGCATCCATTGGGATGCCCCTTGAGTG
TAAATTTGTGTTATCTGACTGCCCAGAAGACACGGAATGGACAGAACCGGCATTAGAATCCGAT
GGGAAGAAGGGCTTGGGTGGGGCTGCATATGACACAATGTCAGAAAATGCCTTCTCCAGACCGA
CCTTTGGTGGGCTCCCAAATGGACTACGAAGTCGGTAATTTTCAACACCATCCTTGTGGACACT
GTCATTGCTGCTGAAAGGAGAACTCAATGGGGAGCTTCGTCTTGTGTAAGTTCTGGGACTAGTT
GTACCAGAGGAAAGCATATCACTTCTCGATTCTGTTCTCCATTTCCTTTGATGACTACGTGTTA
TGAGGGTTTTTAGCCCAGCAAACCACACTTCGGCTTCATCTTTATCCTTGCATATAATGTCCAA
TGATCTATCATGAGATATGAGAGAAAATGACTGGCATTCCTTTTCTGGTCGTGGATACCTCTGA
AAAATTGCCGTTCGTTGTCCAGGAATTATTCTGGACACATGACTCAACCTCAGCTGTTTTTCCT
CTTTCCCGGAAAACCATATCAATATAGATTCATCATTGGAAAGCCTAAATGGGCAAAATTTTGG
CTTCCCTCTGCGCCCGTACTTCAGCAAGTATGCTCCTTTCTTGAGAGCAGTGATGGC

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.393677335
Functional Information
Coding potential Y
Potential coding position 18593558-18588920(+)
18592640-18593764(-)
18588848-18593724(-)
Potential amino acid sequence MTQPQLFFLFPGKPYQYRFIIGKPKWAKFWLPSAPVLQQVCSFLESSDGLNRTLLRSRVPPGRA
VRVIYTPGSSCSTHSDSCLESESGSLVPFLGISG*(+)
MLSSGTTSPRTYTRRSSPLSSPFSSNDSVHKDGVENYRLRSPFGSPPKVGLEKAFSDIVSYAAP
PKPFFPSDSNAGSVHSVSSGQSDNTNLHSRGIPMDAFRVSLSSAVSSSSHGSGHDDGDALGDVF
IWGEGTGEGILGGGNSRVGNSSGVNMDCLIPKPLEFAVKLDVQNISCGGRHATLVTKQGEIYSW
GEESGGRLGHGVDCDVPQPKLIDALANMNIELVACGEYHTCAVTLSGDLYTWGNGTSNSGLLGH
GNEVSHWVPKRVNGPLEGIHVSAISCGPWHTAIVTSAGQLFTFGDGSFGVLGHGDRQSLSVPRE
VESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKIFTWGDGDKGRLGHGDKDTRLVPTC
VAALVEPNFCQIACGHCMTVALTTSGHVYTMGSPVYGQLGNPQADGMLPVRVEGKLHKNFVEEI
SCGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRSSPTLVEALKDKQVRTVVCGINFTAAICI
HKWVSGVDQSMCSGCRLPFNLRRKRHNCYNCALVFCHACSSKKSLKASLAPNPNKPYRVCDSCY
SKLNKGPETDRYSSAKRGSVIQGFNDSVDEELETKSNAQLSRLSSLESFKHMDSRTSKKNKKFE
FNSSRVSPIPNGSSHWSGLNISKSFGSSKKFFSASVPGSRIVSRATSPVSRRASPPRSTTPTPT
LGGLTSPRVVDGVKPNDSISQEVLSLRSQVENLTRKSQLLEADLERTTKQLKEAISIAGEETAK
CKAAKEVIKSLTAQLKGMAEKLPEGAGLVKNSRLPPLPGISIPTDISVASESLGSPRSSGEPCS
NGSNGLLVSNGPTSVRNKLSHPEIPKNGTRLPDSDSKHESEWVEQDEPGVYITLTALPGGTRDL
KRVRFRPSLLSRKEHTC*(-)
MNQGCISLLLPYLEGLEISRGSGSGHHCSQERSILAEVRAQREAKILPI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017