Detail information of Zm00001d043452_circ_g.4


General Information
CircRNA Name Zm00001d043452_circ_g.4
ID in PlantcircBase zma_circ_007798
Alias zma_circ_0001307
Organism Zea mays
Position chr3: 200460142-200461447  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d043452
Parent gene annotation homeobox3
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Zm00001d043452_T017:4
Zm00001d043452_T018:4
Zm00001d043452_T003:4
Zm00001d043452_T014:4
Zm00001d043452_T016:4
Zm00001d043452_T020:1
Zm00001d043452_T010:4
Zm00001d043452_T008:4
Zm00001d043452_T019:1
Zm00001d043452_T012:4
Zm00001d043452_T001:4
Zm00001d043452_T006:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCAGTACATGTCTCATTCTTCTTTCCTGAGGCAGAGCGAAGAACCCTGACACCAATCTTTGGG
TTATCAGTCTTTGGCATTGCACCACCTTTCTTTTTCccatgagtcatgaatggagagtttgctt
ccttgaagttcatttaacgcatctatatagtctgctttgcacacacatgcagggcaaagccatc
cttcatcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATGAGTCATGAATGGAGAGTTTGCTTCCTTGAAGTTCATTTAACGCATCTATATAGTCTGCT
TTGCACACACATGCAGGGCAAAGCCATCCTTCATCCCCCGGAGGAACTAGACATAAAAACAATT
ATAAATGAGCAACGAATGCAATGATGATTTGAGAACATAGGGAAACCAAAAGATGTAGTGGATA
TTACTTTCTTCAGTTAGCAAAGGAGGGCTCAAACAATTCTGGTGGAATCCTCTGTCACAGGCTC
CATCACAAAGAATGATGTCATTTTGTGAAGTAACATCCTTTGAGCCACATATGGCACAAAATAT
CTGAAAGCTGAAACAAATTATCTCTGCACTAACTTGACGACCAGGCTTAAATAATGTTAGATAA
CAAGAATAAAATGAGACTGCCTACATCTTCGCTTGAAATTTGTCCTGCTGAATCAAACAAAGAT
TCTTCAAGCTTCCCCTTCGATAAAAGAGAGTCCATATTTCGAAAAGCTTCCCGGATTCTTAACT
TGCATTGAAGGATTTCTGCCTTGGCTCGTTCAAGCTCCTTCTCGGGTCTTATTTTTTCCAAACT
GCAAATTTATACAATCAACACAGTACATGACAAGAGGCCAAGAGGGCACACTTGAAGTCTATTA
ATAGAATTACAGAAATGCATGGTGGAATGTGAGTTGCAAGATATTCCCAAAATATTGTAGGCAG
ATATAGAACATTCAATGCAGCCAGTATGTGACCAAGATCTGTTCTATTTGACATTTTGACATAC
CACCCTAGCAAAAAAACTGTGAATATGGAATAACAGTTACATAAAAAAGAAAACAAAGTTAGAC
ACCTAGTATATGAGGATATTGTACTTGTACACATTGTATCCTACCTAGTAGCAACTAATTATAT
ACTTTTTGGAATGAAGTGAACTAATAAATGCTCCAAATCAATCACTAATTCTAGAAAAGGGTGA
AATGCACAAAATGGAATTGAACAGCAATATGAAACATGTTTCATGTTTGATGACAAACCTTTGG
CCTTTCCAACCTTCACTTGCATAAGCCTGAATAAAGGCTTGTTCATACTTCATTCGATTCAAAA
TATATTTAATTCTTTGACAAATTTTTAAGTAGTCCTTCTTGGGACTGCGATCCTTTGAAGGCTT
GCAATTTCTTTTTTTTGTCACAGTTGGTTCAGCAGAAGTACTGCCATTTACAGGCTCAGTACAT
GTCTCATTCTTCTTTCCTGAGGCAGAGCGAAGAACCCTGACACCAATCTTTGGGTTATCAGTCT
TTGGCATTGCACCACCTTTCTTTTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.114826921
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b