Detail information of Os05g0592000_circ_g.1


General Information
CircRNA Name Os05g0592000_circ_g.1
ID in PlantcircBase osa_circ_042208
Alias NA
Organism Oryza sativa
Position chr5: 29495018-29495152  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0592000
Parent gene annotation Hypothetical conserved gene. (Os05t0592000-00)
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GC-AG
Number of exons covered Os05t0592000-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCCAAGCGCCCCGCCCCGACCTCCTCCGCGCCAGCTCCCACCTCCGTACAGGAGATCAAGCAG
AAActgccctccaacgctaacatcgacgacatcaccggccgcttcgaggccagcgtcctcacca
tcaccgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 135
Transcript exons: 29495018-29495152
CTGCCCTCCAACGCTAACATCGACGACATCACCGGCCGCTTCGAGGCCAGCGTCCTCACCATCA
CCGTCCCCAAGCGCCCCGCCCCGACCTCCTCCGCGCCAGCTCCCACCTCCGTACAGGAGATCAA
GCAGAAA

Genomic sequence CTGCCCTCCAACGCTAACATCGACGACATCACCGGCCGCTTCGAGGCCAGCGTCCTCACCATCA
CCGTCCCCAAGCGCCCCGCCCCGACCTCCTCCGCGCCAGCTCCCACCTCCGTACAGGAGATCAA
GCAGAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.152467901
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study