Detail information of BGIOSGA016135_circ_ig.1


General Information
CircRNA Name BGIOSGA016135_circ_ig.1
ID in PlantcircBase osi_circ_014235
Alias Chr11:20715640_20724799(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 12849934-12854790  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CA-CC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGACATGTACCCCTCTTGAGTTAGTAAGCTTTTCAGCTCATTTTCAGTTTCAGTTTCAGCTAG
ACTATTGAGTGTAGTTCAGAAGTGATCCTACCAACAtgttagcataatccttgctactgtaggt
tccttagcgagtaagaatgtacagctgcttaacagctggtagtagtagtaaatttagactttac
tttagctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTTAGCATAATCCTTGCTACTGTAGGTTCCTTAGCGAGTAAGAATGTACAGCTGCTTAACAGC
TGGTAGTAGTAGTAAATTTAGACTTTACTTTAGCTGTAAACAGCAAGATGAATAGTATGTCGGT
TACTGTAGCATACTGTAGCACCGACTTAAAGTACCCCCTTGAGTTAGTAAGCTTTTCAGCTCAT
TTTCAGTTTCAGTTTCAGCTAGACTATTGAGTGTAGTTCAGAAGTGATCCTACCAACAATTGGT
ATCAGAGCTCAGGTTAAAGAAGTGTGAGAGAGAGATGGAGGGAGTACCAGCTGCTGGAGCCAAT
GCTTCCAGGTCGCCACAACACCGAGGCCGCCGTCACTCGTTATCGCCAACACCACAGCGAGGAC
GAGGTCGAGGCGCTGCTGTTCGAGAGGTTGTTGTGCAGCGGACTATCAGGGAGGTTGGCGGCGC
TGCTGCTTTCCCCACCCTCACGCGAACCAACTACACCGAGTGGTCGCTGCTGATGAAGGTGATG
CTGCAAGCCCGTGGCCTTTGGGACGCGGTGGAGCATGGTGAATGCGATGAGCAAGAGGACAGGA
TGGCAATGGAGGCCATCCTACGCGCTGTCCCCAGCGAGATGATCTCGCTGCTCGCCACCAAGGA
CTCCGCGAAGGACGCCTGGGATGCCATCAAAGTGATGCGCGTCGGCGTGGACCGTGTGAGGAAG
GCGAAGGCGCAACAGCTGCGCTGGGAGTATGAATCCATCTCGTTCCATGATGGTGAATCGATCG
ACGACTTCGCCCTACGGCTCACAAGCCTAGTGTCTCAGCTTGGGACATTAGGAGAACGAATCGA
GGAGCAGAACGTCATCGAGAAGTTCTTGCGCGTCGTCCCAGAGCGATTTTCCCAAATCGCTATG
TCGATTGAGACCCTGTTGGATCTCTCGACACTCACCATCGAGGACGTCACTGGGTGTCTCAAGG
TGGCGGAGGAACGGCGACCAGCTCCAACGTCGTCGACTACTCCAGCCGGAGGCCAGCTCCTCCT
CACGGAGGAGCAGTGGCTCGCACGGCAGAAGGAGCGACAAAAAGGGGAGGGATCCTCCAAGCAG
TCGCAAGGTGGAGCTCGTCAGCGACCTCGCTCCCATCGCAAGAAAAGAAGTTTTGGTGGCGGCG
TAGGAGGCGAGAAAGGGAACACCAATCGGGACACTGCACCAAACAGATGCCACAATTGTGGCCG
TCTTGGCCATTGGGCCAAGGACTGTCGCCAGCCCAAGAAAGAAGCCGCTCACCTAGCCCAAGGT
GATGACGATGACGACGTCCTGCTGCTTTCGCGGGCATGCGAGCTTGAAGATGACGATGCCACTT
TGTTGATGGCCCACGCTTGCGAGCTCAATGATGGCCCCATCATCGTGCCATCTCCTGTCTCCCT
CGTTGAACCACGAGTGCAGGTGAGCCTGGGAGCCACGGACGCTGAGGACAAGGAGGAGGCGTGG
TACCTTGACACAAGAGCCACCAACCACATGACGGGCCGTGGTGACGTCTTTGCTGAGCTCGATC
GAAGCGTCACCGGCACCGTCAAATTTGGAGACAGCTCCATCGTAGACATCAAGGGTGCCGGTAA
CGTCATCTTCACCGGCAAGAATGGCGAGCACAAGGTTCTCAGTGGCGTCTACTACATTCCGCGC
CTCAAGAGCTCAATCATCAGCATCGGTCAGCTTGATGAAAGCGGGACGCGTGTGCTGGTCGAGG
ACGGCATCATGCGTATCTGGGACCGCTGTCGCCGTCTCCTTGCCAAGATCAAGCGGGGACGAAA
CCGTCTATACGTCCTCCGCCTCGAGGTTGCTAGGCCGATTTGCTTGGCTACGCGACACGATAAT
GTTGCCTGGCGCTGGCACGAGCGCTTCGGGCACATCCACTTCGGCTCGCTAGAGAAGATGGGCC
GACAAGAGCTCGTGCGTGGCCTGCCTCGACTGGAGCATGTCGAGCAGCTTTGCGACACGTGTGT
CATCACCAAGCATCGGCGCGCTGCCTTTCCAAAGGCAGCCAAGTACCGCGCTCAGGAGCCACTA
GATCTCGTCCATGGCGACATCTGTGGCCCTATCACGCCAGCAACGCCAGGTAGCCGGCGTCATT
TCTTGCTGCTAGTCGATGATGCCACACGATACATGTGGGTGGTGCTCCTAGCAGCCAAGAGCAA
TGCACCTGACGCCATCAAGAAAATTCAGATGGCAGCCGAGACTCACTGTGGGCGCAAGCTGTGT
GTATTTCGCACGGACAACGGCGGCCAGTTCACGTCGCTTGAGTTCGCCGCCTACTGCACTGATG
AGGGTATCCAACGTCATTTCTCCGCGCCCTACGCCCCACAATGCTTGCGGAGTTTTGGGGGGAG
GCTGTCAGCACGGCTGTCGTCCTCCTCAATCGTGCACCAACCAAAAGCCTCACTAGCAAGATGC
CGTATGAAGCTTGGCACGGCAAGAAGCCGATGGTCAGCTTCCTACGTACCTTCGGGTGCCTGGC
CTTCGTGAAGGAGCTAAACAATGTGCGCAAGCTCGACGACCGCAGCACACCCGGCGTCTTCATT
GGCTATGAAGAAGGGGTGAAGGCATATCGTGTCCTGGATCCAAGGACACGGCGTGTACGTCTCG
CCCGTGATGTCATCTTTGACGAGAGCCGCGGGTGGGACTGGACGGCAACAAGCGGCACAGGTGC
TCGACCGAGCAGCGATTTCGCCATCAAGTACCATGTTGAGAAGACCACTGGGCATCCTATGCCT
AGTGTGGGGGGAGGCGTGGTGACCCCATCAGCATCCCCAACGCCACTACAAGAGACTTCACCAG
CAACCCCTGCCACACCAGCACCAAGTCCTAGCGTTGCCCCAACAGAGTTCGTGTCACCTCCCTC
ACACGACGAGGAGAGGATCGACGCGGCGCACTCCAACACCCCTGTCGGCTACCGCACAGTCGAC
AACTTGATCGGGGAGAATGCCCCGACACCAGGGATTGCACAACGGGAACTCGAGGAGGCGTCTT
TGCTCCTCGCTGGACCTGGTAAGCCATGCTCGTTTGCAGAGGCGGAGGGTGATGATGCATGGCG
AGCAGCCATGCGTGAAGAAATGGACGCGGTGAATCGCAATGGGACTTGGGAGCTTGTTGATCTC
CTACATGGCCATCGCCCAATTGGACTCAAATGGGTCTATATATTGAAGAAGAACGAGGCCGGGA
AGGTGGTCAAGCACAAAGCTCGTCTCGTCGCCAGGGGATTTGTCCAGCAACATAGGATTGATTT
TGACGAGATGTTTGCGCCCGTCGCGCGCATGGAGTCAATTCGTCTCCTGCTTGCGGTCGCCGCC
CAAAAAGGGTGGCGCGTCCATCACATGGACGTGAAGTCTGCTTTTCTCAATGGAGATTTGGCAG
AGGAGGTGTATGTGAAGCAGCCCCCTGGTTTTGTCGTCGCCGGAGAAGAAGACAAGGTCCTCCG
CCTGCGCAAGGCTCTTTATGGCCTGCAGCAGGCGCCAAGAGCCTGGAATGCGAAGCTTGATCGT
ACTCTGAAGGAGCTCGGTTTCGACCAGAGCAAGCATGAGCACACCATGTACCGACGAAACAATG
GTGGTTTTGCTCTACTTGTCGGGGTCTATGTAGATGACCTTGTGATCACCGGGCCATCGACAAG
AGAAATTGAACAATTCAAGGAAGAAATGAAGGCAAAGTTTCAGATGAGTGATCTTGGCTTGCTT
TCTTTCTACCTTGGAATTGAGGTGAAGCAAGGAGATGATGGAATCTCCCTGAACCAGGGGCGCT
ATGCTCAGCGCATTGTGGAGTCGGCTGGCCTCAAGGACTGCAATCCTTGCGCCACTCCAATGGA
AGAAAGGCTCAAGCTGAGCCGTGATAGCACAGCACCTCCCGTTGATGCGACAGAATATCGATGG
CTGGTTGGTAGCCTTCGCTATCTTGTGCACACACGGCCAGACCTAGCATTTGCTGTTGGGTTTG
TGAGTCGCTTCATGGAGCGGCCAACTGAGGAGCACATGGTGGCCGTGAAGCGCATTCTACGCTA
TGTCGATGGCACGATGGAGTACGGACTTCATTACAAAAGGGAGAAAGAGGAGCAGCGGCTGATT
GGTTACAGCAACAGCGACCTCGCCGGCGACATTGATACAAGGAGAAGCACAAGTGGCATGTTGT
TTTTCCTTGGTTCAAGCTTGGTGAGTTGGCAATCCATCAAGCAGAGAGTGGTGGCTTTATCTTC
CTGTGAAGCAGAATATGTTGCAGCCACCAATGCTGCCACACAAGGAATCTGATTGGCTCGATTG
CTCGGCGAACTCCTTGGGAAGCAACCTAAAACGATCGAGCTAAAGGTGGACAGCAAGTCTGCCT
TGGCGCTGACAAAGAACCGTCTTCCATGAGCGCAGCAAGCATATTGATTTGCGCTATCACTTCA
TCAGAGGCTGCTTGGAGGAAGGAAGCATCAACGCCAGCTTCATCACCACCATGGACCAGCTCGC
TGACATTCTAACGAAGGCATTAGAGCGGGTGAAATTCCAAGAATTGCGAGCTAAGATTGGAATG
GTCCAAATCAATCAAAATCTGATGTGCAAGGATTAGGGGGAGAATTGTTAGCATAATCCTTGCT
ACTGTAGGTTCCTTAGCTAGTAAGAATGTACAGCTGCTTAACAGCTGGTAGTAGTAGTAAATTT
AGACTTTACTTTAGCTGTAAACAGCAAGATGAATAGTATGTCGGTTACTGTAGCATACTGTAGC
ACCGACTTAAAGTCCTATAAAAGGACATGTACCCCTCTTGAGTTAGTAAGCTTTTCAGCTCATT
TTCAGTTTCAGTTTCAGCTAGACTATTGAGTGTAGTTCAGAAGTGATCCTACCAACA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021