Detail information of POPTR_0006s14920_circ_ig.1


General Information
CircRNA Name POPTR_0006s14920_circ_ig.1
ID in PlantcircBase pop_circ_001909
Alias Chr06:12640736|12645610
Organism Populus trichocarpa
Position chr6: 12406187-12411061  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues stem cambium
Exon boundary   NA-NA
Splicing signals   TG-TG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTGTCATGAGATGGAAGAAAGAAGCTTGACAGTTAGAGAAAGAATAGCGGCAGCATTGGTTA
TTACGTTTTACATGATTTACTTGATAATTGAGCATGcgggaaataacagttgtatcagttagtt
agttgaagttaattgagatttagttacaagaaggttagcaataaacagattgtataaataagac
atgtgaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGGAAATAACAGTTGTATCAGTTAGTTAGTTGAAGTTAATTGAGATTTAGTTACAAGAAGGTT
AGCAATAAACAGATTGTATAAATAAGACATGTGAAAGATGTGTGAGTCAAGTAATCAAGTATAC
AGTTTCTGTAATTTCTTCTCTATTTCTTCTCATCCTCAACCTCTTTTCTTTCATTTACACATTG
TTAAGGAAAACTTCCTTGGTATCAGAGCTACAAAGATCCAAGCAAGAACATCCTGTCATTCTCA
ACCATGGTAGATAGTAACAGGATGAGATCTTTGGAGGAGCATAGCAGGCATACTGATGAAGAAA
TACAAGTAATCAGAGCTGAAGTCACATTGCAAGGAACAGAATTAAGCAAGAAGATGGAGCAGCT
ACAAGTACAGAAGGATACATCGTTGACAGCCTTGAATTCCTTAAAGGCCACTCATAATAATGAA
GGAGGAAGAAGGTAGAATACTAACATTGAAGGAAGCATTCCTCCTCAAAGAAATGGCAATCGAG
GAGATAGTATGGGAATTCTAGAAGGCAACAGGGGAGGATATAATGCAATCTTTCCAAGAGTAGA
ATTACCTACTTTTTTTGAAGAGAATCTAAGAGGTTGGATCATGAAGTGTCACAAATTCTTTAAA
ATGCACTTCATACCTGTACACTAATGGATTGAAATTGCTTCTTCATACCTGGAAGGGAGAGCAG
AGATCTGGTGTGAGGGATTCTTGGTATGGGGCAATGACTTAGCCAACTGGGTTCTAAAGGGATT
TGTGTAAGATTTGGGAATCGCAATAATGTGGTTGAAGAGTTTAACAAGCTGAAACAGGAAAAGA
GTTTAGAGGATTATGTGGAAAAATTTGGAGAGCTCAAATCGTTAATGAGTTCATGAAATCCTTC
CTTGCCAGAAGCATACTATGTGTCCAGCTTTATTAATGGGCTTAAAGAAGACATTAGACCAATG
CTGAAAATCTTGAAGCCAAAAACACTCATGCAAGCCTTTGAACAGGCCAAGTAGCAAGAGGAGT
CTAACTATGCGACAGCCAAGAAGAACAGAATGATGCCCAGACCTCTAGCAATGTCTTTGGAAGA
CCAACATGTAGTTTCCAAACAAAACCTTTGTATCAATCAAAGGGTGAAATGTTAAATGGCTGAG
AACAATCCTCTGACAATCTTTATGAGCAAAGAAGGAAGATTGGATTGTGTTTAAGTGTGGAGAA
AAATTCAACCCTGGACATAAATGTACCGTGAAAGGACTGCGTATGATGGAAAGATTGGAAGATG
GAAGTGAAGAGTTTTTTTAGACTGAAGAACAACGAGAAGTGAAAACTGTGGAGGAAGATGGGAT
AGAAGAAAATGGGCTATCTCTGAATGCTACGGCAGAAAACTATGTTGATAACACTATTAGAATA
AAAGGAAGTTGTCAAGGGGAGGAGCTCATAATATTAATAGACAGTGAAAGTACGCACAGCTTCA
TTGATGAAAAGGTGAAGCTGAGAATCAAGGTTGCAATGGTAAGGACAACAGTGTTGGCAGTCAC
CGTGGCGAATGAAAATATTATGAGATGTGATGCGCACAACTTCTTGTGGTTCATGCAAGTTTGC
AAATCTTGGAGTTGGGGAGATGTGACATGGTGTTAGGAGTGGATTGGTTAAGGGTGTATTCACC
CATATTGTTTGATTTTGTTAAACTGAAACTTTCATTCAAGAAAGAAGAAAGAATGATTGAACTT
AAAGGCGTAGTAAATGAAGTAAGACTACAAGAGATCATGGCAACCAAGGCTTACAAAAGTCTTA
AGAAAGCTGTAAGTGGATTTGATGGACAGTTCTTTGCAATTGAAGTTGTAGAGGCAGCAGTGGA
TTATGAAAAAGCATTGTTGAAAGAGTTTCACATGGTGTTTGCAGAATCCACACAACTTTCTCCT
GTCAGCAACTTAGACCACAAGATTCCATTATTTCCAGGAGCAAAGTCTGTGAACATTAGGCCAT
ATAGAAGTTTTTTAATTCAGAAGGAAGAAATTGAAAGGCTAGTGAAAGATATGCTAAAGAATGG
GATTATTCAACACAGCAGTAGCTCATTTGCTTCCCCAGTCCTTCTAGTCAAGAAGAAATACAAC
ACATGGAGATTCTGCATAGACTATGGACATCTGAATAGTTTAACTGTTCAAAATAAGCTCCCAA
TTTCATTAGTTGATGAGCTGCTGAATGAACTTCATGGATCACGGTTCTTCTCCAAGTTGGATAT
AAGGTCAGCATACCATCAAGTGAGAATGTTTAAAGCAGATGTGGAGAAAACAGCCTTCAGAACT
CACCATGGCCACTACGAATTCAAGGTAATGCCTTTTGGATTAACAAATGCTCCGACTACATTCC
AGACATTGATAAATAATGTGTTAGAACCTAATTTGAGAAAGTTTATATTGGTATTTTTTTATGA
TATACTAGTATATAGCTCTACCTTAGAGTTACATATTAGTCATCTTAAATTAGTATTGGAGCAA
CTAAAGAACAACCAGCTTTTTCCAAAAAGATTAAAATGTTCTTTCTGTAAAAGGCAAGTTGAGT
ATCTTGGGCATATTATCTCAAAGAAAGAAGTAACCATTGATCCTAAAAAGACTGAAGCTGTTAA
GGATTGGCCAGTACCTTCTGCTATCAAAGAATTAAGAGGGTTCTTAAGCTTAGCAGGTTACTAC
AGAAAGTTTATTCAAGGGTTTGGCATGATTAGCAAACCACTTACTGACTTACTGAAAAAGAACA
GTTTTGTATGGAATAATAAGGCTCAAGATGCATTTGATAAAATTAAAGTAGCTCTAAGCACAGC
ACCAGTGGTGGCACTGCCTGATTTTGATAAGGTCTTCGTATTGGAAACTGATGCTTGTTCCAGT
GGATTGGAAGCAGTGTTGAGCCAAGAAGGTAGACCTCTAGCTTACTTCAGTAAGGCTTTGAGTC
TAAGACACCTGAGGTTATTAATCTACAAAGCAAAATATATGGCCATTTTGATGGCAGTTGAAAG
GTGGAGGCACTACTTGGAGCATAATCAATTCATCATAAAAACAGATCATGAGAGCCTGAAGTTC
CTACTTGAACAGAAGATCCATACACCAATACAGAAGAAAGGGTTAACCATGTTAATAGGGCTTA
GATATCAAATTCATTACAAAAAAGGAAAGGAAAATGTGACAACTGATGCATTGTCCAGAATATT
TGAAGAAGAATGAGCAACTGTTGGAAATAAACAGATTGATATGCTTAATGGCAGGGTTGATGCA
ATCACTGTAATGGTGCCAGCTTGGCATGAAGAAGTAAAGGCATCTTATGAGAATGATTCTATCC
TACAAGGAGTCATTACTGAGAAGATGATTAATATGAATAGCTGGCCACAATATCAGTTTACAGA
AGGAATTCTCAGATTCAAGGGAAGGACTGTAATTGGATCAAGAGGTAGTTTGAGGAAAAGTTTA
ATATCTACAGCTCATGATTCAAATATTGGTGGTCATGCAGACATACAGAATTCTTACAGATGGC
TGAAGACTTTGTTTTATTGGCATTCCATGAAAAAAATGGTAGAAAGGGTTGTCAATGAGTGTGA
TGTGTGTAAACAGGACAAATTAGAGAGAGTTGCCTATCCAGGACTCTTACAACCTCTAGAAACT
CCAGGTGGGGCATGGAAGGATATTACTAGAAGGACTTCCCAAGTCAGAAGGAAAGGATACAATT
AGATTCACTGAATTTACACATTTCATTGCCATGTCTCATCCTTTTACAGCCCAAGATGTAGCTC
AGTTATTCATGTGACATCTCTATAAACTCCATGGACTACCAGCTACAATACTGACTGATAGGGA
CAAGATCTTTACTAGCTTGTTCCGGAAAGAATTGTTCAAGAAACTAGGAGTGAAGTTATACATG
AGCTCTGCCTACCATCCACGGTCAGATGGGTGGATTGAGAGGGTGAATCAGTGCTTGGAAGTTT
ACTTAAGATGCATGACAACGCAATATTCTAAGAGATGGCTACGGTGGTTGTCTTTGGCGCTGTG
GTAGTACAACATTAGTTTCCATTCAGCCATAAAAATGACTCATTTTCAGGCTCTATTTGGGTAT
CCACCCCCTTGCAGAGAGTTATCTACTCAAGAAGCAAGTTCTGTAGCTACAGTGAATGAGATGA
TAGCAAGAAGAGTTACTACTGATCAGTGGTTACAAAAGCAATGGGATATGGCTAAGAATAGGAT
GAAACAGATGATTGACAAACACGGGATTGAGAGAATTTCCAGTTGGGGATTATGTCCATTTGAA
GCTTCAACTATGACAAACACAGGATTGAGAGAATTTCCAGTTGGGGGTTATGTCCATTTGAAGC
TTCAACTATATAAACAATCAAGCATAGCATTGAGAAAGCACTTCAAGTTCAACCCGTGATTTTA
TGGTCCTTGGAAAATTCTACAGAAATTGGGAGCAGTTGCCTACAGGTTATAGTTGCCAGTTGGG
GCTGCAATACATCCTGTTTTACATGTCTCGTTGCTCAAGAAGAAACTGAGGACAAATGCCGTCA
TAGCAACAACTATGCCAGCAGTGGATGATCAAGGAAGGGTGAAGATTCAACCTGTGGCTATACT
AGACAGGAAGCTCATGAAAAAAGATAACAGGGCAGTAGTAATGGAGCTAATCCAGTGGTCTAAT
ATGTTTGAGGAAGATGCCACCTGAGAAATCCTGGAAGAATTGAGCCAACAGTTCCCTGATTTTA
ACACAGATTTTTGTGGACAAGAATCTTAAAAGGAAGGGTAATTGTCATGAGATGGAAGAAAGAA
GCTTGACAGTTAGAGAAAGAATAGCGGCAGCATTGGTTATTACGTTTTACATGATTTACTTGAT
AATTGAGCATG
Conservation Information
Conserved circRNAs NA
PMCS 0.094854602
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zheng et al., 2020