Detail information of AT2G07806_circ_g.1


General Information
CircRNA Name AT2G07806_circ_g.1
ID in PlantcircBase ath_circ_013112
Alias NA
Organism Arabidpsis thaliana
Position chr2: 3485833-3486044  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene AT2G07806
Parent gene annotation unknown protein
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues seed
Exon boundary   No-No
Splicing signals   GC-AG
Number of exons covered AT2G07806.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAAAAAAAATGGTTAGGTGTGCCCTTTCCTATGGTGTCTCTTCTGTGTTAGCTAGTATAAGTC
TTAGTGCTTTTGTTTTAGTAAGGTCAATAGGAGTTAgtatgtgtcataagttcaggcacagtgt
cttctaggaagaaactttgtgtaaggatcttttacagtaaagcaaggtattgatcaaagtgaca
gtggtgag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATGTGTCATAAGTTCAGGCACAGTGTCTTCTAGGAAGAAACTTTGTGTAAGGATCTTTTACA
GTAAAGCAAGGTATTGATCAAAGTGACAGTGGTGAGGGTAACCTTGTGAAAAAAAAAATGGTTA
GGTGTGCCCTTTCCTATGGTGTCTCTTCTGTGTTAGCTAGTATAAGTCTTAGTGCTTTTGTTTT
AGTAAGGTCAATAGGAGTTA
Conservation Information
Conserved circRNAs NA
PMCS 0.115172956
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017