Detail information of Os02g0313400_circ_igg.1


General Information
CircRNA Name Os02g0313400_circ_igg.1
ID in PlantcircBase osa_circ_014435
Alias NA
Organism Oryza sativa
Position chr2: 12370720-12372097  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACACCACAAACAGCCTATGTGGTTACAAGATTGTTACTGGACAACCATCGGATAGACTTGGAGA
GGATTTCTCAGAACATTACAAAGACTTTACGGAGAGgtttctgacattgaccacattgagaggt
ggacgtcgtgcatgtatatggctcttcctatctttatggtacgaacaatttgttttgtcaaaca
atggattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTCTGACATTGACCACATTGAGAGGTGGACGTCGTGCATGTATATGGCTCTTCCTATCTTTA
TGGTACGAACAATTTGTTTTGTCAAACAATGGATTTTTTATAAATTGTTACTTCCTCCGTTTCA
TATTATAAGACTTTCTAGCATTGCCCACATTAATATATAAGTTAATGAATCTAGACATATTGTG
CCTAGATTCATTAACATATATATGAATGTGGGCAATGCTAGAAGGTCTTATAACCTGAAACGGA
GGTAGTACTTGTTAGTGAATGTCATCTTATCTTATGCTTTTTTTTTCACTACATTTGCATGATC
TGCAGAGAGGGGGATCGAGCAGCAAGTTCCTCAACTATTTCGTTAAGCAAATTGTTCCAGTTTT
TGACAAGGTAATCTTCTTTATCTTGTACATTGGTCCCTGTGCTTTGTTGGAAAAAACAGTAAAT
GCTTCTTTTTAATTATATTATGCATGGCAGCTCTACAACCCTTGTTTTGTTGTCATACATAATG
TAACATTTTGCAGTTTGCACACCATTTTTTTTTTGAAACATTTGGTTACATTCCTTACTTGTGA
TAAAGAAACAGCTCTTGCAATCATGCACATTTCTGCATTCTGCACTAACATTGCATGGTAAAAA
AAAGTCTGTCGTATTTTTTTGTAACTATGGATATTCTAATTGAATTGCCATCATTTTGGCAATC
AGACTCCCCACCATGCCTTGAACTTGTTTATCTTCAAAACAAAGTGAATTCGCATCTTAGAGCA
TGAAGGTTTTCTAGAGCATGAAGGTTTTCTAGAGCATTAAGGTTTTCCCCTCTTTTTTACCTGT
TTTAGATTCCTGAAGAGAAGAAACTGGATTTGCTCAAAACAGTTGCTGCAAGCTCACCATATGC
TACAGCACAAGATGCACGGCAGCTGCTTCCCCCTGTTGTTCAATTGCTCAAGGTCTGTGCAATT
CCTGTCTGATAGGTGTCCAATCCCCCTTTGTTAATGTTTTATTTTGTCCCCTAGAAGACATTGT
TAGATGGTTTCCCCTCCACCGCGGTGTTACACAATAAATGTCGTGTCTTACCATTGCATTTACG
TTTTCTTTTACAGAAATATATGCCTGGGAAGAAGGTGGAAGATATCAACCATAATTATGTTGAG
TGCCTGATGTACATTTTTCACCATTTAGCCCATAAGGTTTGATGACAGAATGTTTATCATCTAT
TATGAACCATGTCTTTTCTTCATGGATGGCCTTGTGCTGACCAAATGAAATACAGACACCAAAC
ACCACAAACAGCCTATGTGGTTACAAGATTGTTACTGGACAACCATCGGATAGACTTGGAGAGG
ATTTCTCAGAACATTACAAAGACTTTACGGAGAG
Conservation Information
Conserved circRNAs osi_circ_011585
PMCS 0.12711253
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017