Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d008529_circ_g.5 |
ID in PlantcircBase | zma_circ_009547 |
Alias | zma_circ_0002799 |
Organism | Zea mays |
Position | chr8: 11906720-11907282 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d008529 |
Parent gene annotation |
Endonuclease 2 |
Parent gene strand | + |
Alternative splicing | Zm00001d008529_circ_g.4 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d008529_T002:1 Zm00001d008529_T001:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.180650207 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
11907217-11906720(+) 11906741-11906720(+) 11906821-11907052(-) 11906858-11907052(-) |
Potential amino acid sequence |
MDGLTTSSTGKIARTNTRPARTNNLTESLMFLAHFVGDVHQPLHVGFQDDEGGNTITVHWYRRK ANLHHVWDVSIIDTAIKDFYNKSMDTMVEALKMNLTDGWSDDIVHWENCKNKHATCANE*(+) MFLAHFVGDVHQPLHVGFQDDEGGNTITVHWYRRKANLHHVWDVSIIDTAIKDFYNKSMDTMVE ALKMNLTDGWSDDIVHWENCKNKHATCANE*(+) MVLPPSSSWKPTCSGWWTSPTKCARNIRLSVRLFVRAGRVFVLAIFPVDDVVRPSICKIHLESL YHGIHALVVEVLDRRINNADIPHVMEVCFPPVPVDGDGVTALVILEAYVQRLVDVADEVCQEHQ ALRQVIRSRRSRVCSCNFPSGRCRQTIHL*(-) MEVCFPPVPVDGDGVTALVILEAYVQRLVDVADEVCQEHQALRQVIRSRRSRVCSCNFPSGRCR QTIHL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |