Detail information of BGIOSGA006661_circ_igg.1


General Information
CircRNA Name BGIOSGA006661_circ_igg.1
ID in PlantcircBase osi_circ_003837
Alias 2:11950921|11951179
Organism Oryza sativa ssp. indica
Position chr2: 11950921-11951179  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGGCGGCGGATGGGGATTTGGAATTGGATTTGGAGAGGAGGAGGGGATTGTTGCGTTAGCGTT
TGGGTTGCGGGGTGGTGTGGTTTGGTGGTGGGGGCGacgcactcgatgctcgccatgtccatgg
ccacagatcgaacccgaattcagctctcagctcagccccccgcccgccgcccgcgagcccgccg
ggcagggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACGCACTCGATGCTCGCCATGTCCATGGCCACAGATCGAACCCGAATTCAGCTCTCAGCTCAGC
CCCCCGCCCGCCGCCCGCGAGCCCGCCGGGCAGGGGGAGTCGATCGGGTCGAACCCTCGTCGGA
GGCGGAGGGTGATCCGCCGCGATTCCGATTAGCGGCGGCGGATGGGGATTTGGAATTGGATTTG
GAGAGGAGGAGGGGATTGTTGCGTTAGCGTTTGGGTTGCGGGGTGGTGTGGTTTGGTGGTGGGG
GCG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021