Detail information of AT1G63430_circ_g.2


General Information
CircRNA Name AT1G63430_circ_g.2
ID in PlantcircBase ath_circ_008501
Alias NA
Organism Arabidpsis thaliana
Position chr1: 23524427-23525617  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT1G63430
Parent gene annotation Leucine-rich repeat protein kinase family protein
Parent gene strand +
Alternative splicing AT1G63430_circ_g.1
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G63430.2:5
AT1G63430.1:5
AT1G63430.3:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACGTGGTCTCAAGTACCTTCATATGGAACTTGATCCTCCGTTTACAATCTCTGAGCTGAGCTCA
AACGCAATTTATCTCACAGAAGATTTTACTCCCAAGgacgagctttcaagggaactgcatgcaa
aacaaggatcttaagcatagatcttcttcccaatgcggtgtgtaagatagaataattttcactt
tatcgaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACGAGCTTTCAAGGGAACTGCATGCAAAACAAGGATCTTAAGCATAGATCTTCTTCCCAATGC
GGTGTGTAAGATAGAATAATTTTCACTTTATCGACATACATGTTCAATTAGTCTTGGTTTTCTG
AATGTTATCCCTGTTGCAGCTAATGCACAACTGGTCAAAACTCATGGAAGCCCGAGCGCTGCTC
CTAAGCACCAATCAGCTCAAATGGTGGCTAAGCACCATAGAGCATCAAAACCTAAATGGCTTCT
AGCTCTTGAGATAGTCACAGGGTCAATGGTTGGTTTGCTCCTTCTGGTTGCACTTTTCTCTGCA
GTTCACCGCTGGAACAATAGATCAACTCTCATCATTCCTTGGAAGAAATCTTCAAGTGAAAAGG
AAAAGTTCACAGTCTACGTAGGTTAGAATCTTTCCTAATTCTTTACCTTCCAATGTAGAATCCA
TGGAGCAAAGAACTAAAAAAACGTGGCATGTTTTTATTTTAACTACAGATTCTGAAATGCTGAA
GGATGTTTCGAGATTAACAAGACAAGAGCTCGAAGTGGCGTGTGAAGACTTTAGCAACATCATT
GGTTTATCAGCAGATAGTCAGATCTATAAAGGAACGCTGAAAGGTGGGTCTGAGATTGCGGTGA
TCTCTCTTTGTGTAAAGGAAGAAGATTGGACTGGATATCTTGAGCTCTATTTCCAGAGAGAGGT
AGCTTCCTCTCATGTTATCATCATCACCAAGCCACTTGGATTGAACAATCTTTAAACATATCCT
CCTTTTTTCTGAGATTTTAAATCCATCTCCTCACTGTTTCAGGTTGCAGATTTGGCTAGATTAA
ACCACGAGAACACAGCGAAATTACTTGGATATTGCAAAGAGATCTCACCATTTACAAGAATGCT
TGTTTTTGAGTATGCATCAAACGGAACACTATATGAGCACCTTCACTGTAAATAGTCTAACTTA
CCTCAGAGCTTTGTTGCATCATCCTGTATTGTTTTAGCTAGATAACATTTTTATGTGAAATATT
TTGATGCAGACGGGGAAGCGGCGTTAGTATCGTGGGCAAGACGGATGAAGATTGTTATAGGCAT
CGCACGTGGTCTCAAGTACCTTCATATGGAACTTGATCCTCCGTTTACAATCTCTGAGCTGAGC
TCAAACGCAATTTATCTCACAGAAGATTTTACTCCCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.192116464
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017