Plant Circular RNA Database

Detail information of Csa2G402000_circ_g.4

			
						 General Information
					
						CircRNA Name
						Csa2G402000_circ_g.4
					
						ID in PlantcircBase
						csa_circ_001259
					
						Alias
						Chr2:20571980_20576786
					
						Organism
						
							Cucumis sativus						
					
						Position
						
							chrChr2: 20571980-20576786  JBrowse»						
					
						Reference genome
						
							Cucumis sativus v1.5						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							Csa2G402000						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							Csa2G402000_circ_g.1 Csa2G402000_circ_g.2 Csa2G402000_circ_g.3 						
					
						Support reads
						NA
					
						Tissues
						leaf,root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Csa2G402000.1:5

General Information
CircRNA Name	Csa2G402000_circ_g.4
ID in PlantcircBase	csa_circ_001259
Alias	Chr2:20571980_20576786
Organism	Cucumis sativus
Position	chrChr2: 20571980-20576786 JBrowse»
Reference genome	Cucumis sativus v1.5
Type	e-circRNA
Identification method	CIRI2
Parent gene	Csa2G402000
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	Csa2G402000_circ_g.1 Csa2G402000_circ_g.2 Csa2G402000_circ_g.3
Support reads	NA
Tissues	leaf,root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Csa2G402000.1:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGTGGAGGCTAGAAGTTCAGGTCTTTTCTTGAGAGGCAGGGAACCACTGAAGAACCGATCTGCT
GTTTTTGCACTTGGTGATAGAATAAAGATATTAAAGgtggcagaatcaaaattggcaaagtttg
tcgaagagatcattgtccctccaagaatgatagacataattgttgatggagaggtattgtcggt
atctgtac

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTGGCAGAATCAAAATTGGCAAAGTTTGTCGAAGAGATCATTGTCCCTCCAAGAATGATAGACA
TAATTGTTGATGGAGAGGTATTGTCGGTATCTGTACACTTCACTCCCATTTGGAACTTGGCGTT
GTTTTCTACTCATTTTCTTATTGTTCTTGCTCTAAATTAGTTTTCGGTATCCTTTAATTTTTTC
AAGTTTCTCCTGTATATCGTTCTTATTAATTCAGTTTTGTTTTCCTGTTTAAAAATGCATATAT
ATTTAGTAGTAATGAATAAATATCACTCATTCTAATAGAAGGGAAAAAAATTACATGTTCTTCG
ATTTCGTTTGTCCTTGCATAATTTGTGGTACCTAATTTGAAATTTCTTCATGCTTCCTTCTCTT
TTTCTCATTGAAATGCCTATGTTGATATTCCAGTGAACTTTTTTTCTTTCTCAGGTTAATGATG
AATATTTGAGGACTCTTGAGATTCTAAGTAAGAAATTGGTGGTCGCAGAAGTGGATCCAATGAT
AAAAAATTCCAAAGCACTAAAGGATGTACAGCCTGAGCTTGAAAAACTCCGACAGAAAGCAGTG
TCTAAGGTTGTGCTTTGTCTCACAGTGGCTGTATTCCTTTGGAAATATATGTTAGCCTGTGTTT
CTTAGGGATATTTATGAAGTAGTATGCTATCTACACCAACCTCATTCACAGGACTCTGGTAGTA
CAGCAGTAGTTAAATTAAATTTGTAGAAAAGACATTAAATTCAAAACCCCCTTCCAGCTTTACT
GTGAGTAGCTTTTATAACACCAGATTTGACTTCGGCAATTCAGGAACAGGATGCAACTTTTTTC
CCTCTTCCTGTTGTTCTAATCTCTAATTTGTTTAAGAATGAAATTATGAGTTCTCAGTCACGTA
GGGGGCGTTTGACCCTATGACTATGAAGGAGTGGAGTGCTCCATGTTTGCCTAGGGGTTATCAT
AATCCTAGGATTAAGATTAGGACTATTCTACTCTTGCCCTTATTTCTCATCTGTCACTATTCCT
CATTCCCACCTTTCACTATTCTTCACCTCCCATCTCTTCTATGTCGCTATTCCTCACTCCCCCT
TTTCACTATACCTCACTTCCCCAAACATAGATTACAATAATCTACACCCCAAATACAGACTATA
ATAAACCACAAACTATAATAACCACAAATTATAATATCCCCCTCCATGCCCCAAACACCTCCAT
GGTGATTAAGCATGTAACATAATGGACATATTAGGAATGTAACATGAGTGAAGACTGACATGGT
ATTACCATTCCCTTGTACTTCTGGAAGTTTGGTTGGTCATGTATATTTGGATTTATGCGTCATT
AAAATTAATGACGTTTTTAGATGAGATTGATGTCTTGATTATCTCATATTTAGAGATGAAAGAT
GTGGTCACTTGATTAAACAATAAATTTTGAATTTTGATTTCAAGAATATGTTACTGTTTGCTAT
TTTGGTTTTATTTCGCAAACTTCAAAGGAAAAAATCATTTTTCTTTGGCAGAAAGTTCTGAACT
TTTTTTCAGTATCCTCATCTAACTTGGTGCAGCTAGATCTCCAATTTAACTGCATATGTAGCAT
TTATTGAATTTTTGTTTATTTTTTTGTTATTTGACGGACTTTTATATGCATTTTGTCTATGTTA
TCGTTTTTCAGGTCTATGACTTCCTTGTCCAGAAACTCCAGGCTTTGAGAAAACCCAAGACAAA
TATTCAGATTCTTCAACAGAGTGTTCTTTTGAAGTACAAGTAAGTTCCAAAATTTTTGCCTTTT
CATTTGTTGTCAGATGAAAAGACTGCCAATTATGGAATAAGCAGATATTCAGAAAGTTAATTTT
CCAATAACTTTCTGTATTTATATTATTCAGGAATTCCTACGCTCATTTTGAACAGTTCATGGAT
TTAGTTTTATCTAGCTTTTGTTTGGTGTAAATCTAAGCATCATATACTCATTATACTTTATATT
TTTTTCTTTTCTTTCCAATTGGAGAGCTTCTTGTAAATACAAACATCTAGGTGCTGAGGTTTCC
CCTTATTTCATCTAACAATGAAATGTTTCTTATTAAAAAAAGAAAAAAGACCTAGCAGAGTTCA
TGCCACAAGTACCTTGTTTCCTCAATCCTCCATTTCTTCTATCGTGTGTATTGAAGGTCTGTCG
TTGTCAAAACTCGTGCTAAGAGGACACCACTTCTCTTCTCCATCTCATAAAGGTTCCCGTTGAA
GTTGAGTTTTACAATTATCTCCCACTTATCTTACATGTATGCTAGCATTCTGTTGTGGCTCTTT
TTTGTGATATATAATTAAATTTGCCTTCAACCACCAACTTAAGCTTTTGGATGAATTGGTGGTT
TAATATGGTATCAGAGCAGGTGGTTCAGAGAGGTTCTATGTTCAAGTCCCTGCATTGTCGTTTC
CTCCCAAATTAAAATTGATTTCCACTTGTTAGGTCTTTCAAATATTTCAAATCCACAAGTGAGG
AGGAGTGTTAGTGATATATAATTAAATTTGCCTTTAACCACCAACTTAAGCTTTTGGATGAATT
GGTGGTTTAATAGCTCTAACCATCAGGGGTTGGCCTTATAGTGAAAAGGAGACATAATCTTGAC
TCTCAATAAATGGCTAAGAGGTTAAGGATTCAATCTAGTGGTCACTGGTCACCTACCTAAGAAT
TAATTCTCTACGAGTTTCCTTGACACCCAAATGTTATAGGTCAATTTCCTTGACACCCAAATGT
TATTAGTCAAGGTCCGCAGATGTTGACTTGGATACTCACGGATATATATAAAAGTATCCTATTA
TGGCTCTAATGAATCAGGGGTGTGTGAATATTGTAAAATAGATTTTGTGGACCTCCCTACCATT
CAACTGATCTTTGCAGAAGAAAATTCTGTGGCCACTGGCCATCTTCCAGTCTGATACAGAAGTT
AGGATCTTCTTTGCCTTCTTCTATATGTAATTTAATGAGCAGATTCAGAAACTATTCTATTACA
CCCATATTTTCCTGCGTTACTTCTTGTATACTTATAGTTGGTTAATTCATTGATTGTTTGTTAT
TATAATCTGTGCCTTCTATGCACAATGAAGAAATTGATCAATGTGTGTCTCAACAGCGATCTAT
TTAATCCTTCCCATGTACTTTCTTATCTATAGAACTCAATATTATTCTATGATTTTGCATCTTT
TTTGTGTACCCAAAGTTTATCATGGAATACCTTTTCAGATTCTGCTATCTTAATGATAATGTAG
GTATGTTATTTCTTTCCTCAAGGATCATAGCAAAGAAGTTTACAACGAGGTTCGGACGGCATAT
ATTGATACAATGAACAAGGTAATTGTTTAAGACATCATTTGTTTTTGTAAAGGTGTGGATGGTT
TAATTTCGTGTTGTGGAAGAGGAAGACACCAATTCAAATCCTTAGACAATATATTACTCAGATA
ATTTATGCAATTATTATTTTGAGTTATCTCTATGTATGGATAATTCATGGTTTTCTTGATTTAT
TTTGACCTGGGAGTTCCAAATCACTGATGTTGTCATGATGTGATGCTAGTTGCCCACTATGTTA
AGAGTATATTGCCTCTTGGACACAACAACTCGCAATGGATTTTTTGTCAGACTTTGTCAGTAGT
TGTACCATGTAGGTAATGAGACCATATGAATACTTCAAACCTTCTAGGCATGTTAGAGTGTCAA
TAAGTAGTTCATCAACTCCAGAGCACTGAAAGTGACTTAACATTGAAGGGATCCAATCAAGTTA
GATGGTTTCATATGAATTTTTAAGTGCTTAAAAGCACTTAGAACGTCATTGCAAACATACTCTT
AAATTATTTTGAAATCCACAAACAAATAGAGGAAAAATATATAAAAAGTGGTAATGATTTGGAA
CCAATTCTTCACATTCCTCTTAAGGGAATCTATCCATGGGAGAGGAAGATGTGCTTATCACTCA
TTCCCAACAGAAACTTTGGCATTGGTTTCTATATTCCCTGCAGAAGATGAAGAAATTTCTTATT
GGTTTCCACATACCTCACTTTTCATTCTCTAATTATCACTTATTTCTGGCAGAAATTTTTTGTG
AGCATGGAATCGAGTAGGCTGCTATGATATCTCTTGTGATTGATGTAACAAACAGTAAGTACTA
AAAATGGTCCAAGGGGTGATAAGGACTTATCTATTCAAGATATTGGAACATAGTACAGACTACA
GAGAACAAATTTTCTGCATGGTTCAAGTCTACGCTATTTCTTATTTTGGAATTGATATGGCATT
ATGTTGACACTATTCCAATGCCTATTTAATTGGACATAAGAATAAATGATTTGGGGTATTTTTA
GATCCAACAACTACTTTTATCTCTTTCTTATGATTACTTGCCAATGTTGCCATGCGTTTTTTTG
TCCAATACATAATTGCTTTTCAGCAGGCTCACTGACATGTTTTTATGCATCAGTAAAAATTGTT
TCCTGTTTTTAATGGGACAATCATTTATCTAATGAGTATTGAGTTATTGATGTTGTTTTTTTGA
AGAGGAAACGAGTCTCAATATTATTAATGTTTAAATATTTGAGTTATTGATGTATTGAAACTAA
TATTCATGTTTCTCAGGTTTTGAGTGCACATTTTCGTGCCTACATACAGGCACTAGAGAAATTA
CAGTTAGACATAGCGACATCTAATGATCTGATTGGGGTGGAGGCTAGAAGTTCAGGTCTTTTCT
TGAGAGGCAGGGAACCACTGAAGAACCGATCTGCTGTTTTTGCACTTGGTGATAGAATAAAGAT
ATTAAAG
						
					

			
		

Sequences
Splice junction sequence	GGTGGAGGCTAGAAGTTCAGGTCTTTTCTTGAGAGGCAGGGAACCACTGAAGAACCGATCTGCT GTTTTTGCACTTGGTGATAGAATAAAGATATTAAAGgtggcagaatcaaaattggcaaagtttg tcgaagagatcattgtccctccaagaatgatagacataattgttgatggagaggtattgtcggt atctgtac
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTGGCAGAATCAAAATTGGCAAAGTTTGTCGAAGAGATCATTGTCCCTCCAAGAATGATAGACA TAATTGTTGATGGAGAGGTATTGTCGGTATCTGTACACTTCACTCCCATTTGGAACTTGGCGTT GTTTTCTACTCATTTTCTTATTGTTCTTGCTCTAAATTAGTTTTCGGTATCCTTTAATTTTTTC AAGTTTCTCCTGTATATCGTTCTTATTAATTCAGTTTTGTTTTCCTGTTTAAAAATGCATATAT ATTTAGTAGTAATGAATAAATATCACTCATTCTAATAGAAGGGAAAAAAATTACATGTTCTTCG ATTTCGTTTGTCCTTGCATAATTTGTGGTACCTAATTTGAAATTTCTTCATGCTTCCTTCTCTT TTTCTCATTGAAATGCCTATGTTGATATTCCAGTGAACTTTTTTTCTTTCTCAGGTTAATGATG AATATTTGAGGACTCTTGAGATTCTAAGTAAGAAATTGGTGGTCGCAGAAGTGGATCCAATGAT AAAAAATTCCAAAGCACTAAAGGATGTACAGCCTGAGCTTGAAAAACTCCGACAGAAAGCAGTG TCTAAGGTTGTGCTTTGTCTCACAGTGGCTGTATTCCTTTGGAAATATATGTTAGCCTGTGTTT CTTAGGGATATTTATGAAGTAGTATGCTATCTACACCAACCTCATTCACAGGACTCTGGTAGTA CAGCAGTAGTTAAATTAAATTTGTAGAAAAGACATTAAATTCAAAACCCCCTTCCAGCTTTACT GTGAGTAGCTTTTATAACACCAGATTTGACTTCGGCAATTCAGGAACAGGATGCAACTTTTTTC CCTCTTCCTGTTGTTCTAATCTCTAATTTGTTTAAGAATGAAATTATGAGTTCTCAGTCACGTA GGGGGCGTTTGACCCTATGACTATGAAGGAGTGGAGTGCTCCATGTTTGCCTAGGGGTTATCAT AATCCTAGGATTAAGATTAGGACTATTCTACTCTTGCCCTTATTTCTCATCTGTCACTATTCCT CATTCCCACCTTTCACTATTCTTCACCTCCCATCTCTTCTATGTCGCTATTCCTCACTCCCCCT TTTCACTATACCTCACTTCCCCAAACATAGATTACAATAATCTACACCCCAAATACAGACTATA ATAAACCACAAACTATAATAACCACAAATTATAATATCCCCCTCCATGCCCCAAACACCTCCAT GGTGATTAAGCATGTAACATAATGGACATATTAGGAATGTAACATGAGTGAAGACTGACATGGT ATTACCATTCCCTTGTACTTCTGGAAGTTTGGTTGGTCATGTATATTTGGATTTATGCGTCATT AAAATTAATGACGTTTTTAGATGAGATTGATGTCTTGATTATCTCATATTTAGAGATGAAAGAT GTGGTCACTTGATTAAACAATAAATTTTGAATTTTGATTTCAAGAATATGTTACTGTTTGCTAT TTTGGTTTTATTTCGCAAACTTCAAAGGAAAAAATCATTTTTCTTTGGCAGAAAGTTCTGAACT TTTTTTCAGTATCCTCATCTAACTTGGTGCAGCTAGATCTCCAATTTAACTGCATATGTAGCAT TTATTGAATTTTTGTTTATTTTTTTGTTATTTGACGGACTTTTATATGCATTTTGTCTATGTTA TCGTTTTTCAGGTCTATGACTTCCTTGTCCAGAAACTCCAGGCTTTGAGAAAACCCAAGACAAA TATTCAGATTCTTCAACAGAGTGTTCTTTTGAAGTACAAGTAAGTTCCAAAATTTTTGCCTTTT CATTTGTTGTCAGATGAAAAGACTGCCAATTATGGAATAAGCAGATATTCAGAAAGTTAATTTT CCAATAACTTTCTGTATTTATATTATTCAGGAATTCCTACGCTCATTTTGAACAGTTCATGGAT TTAGTTTTATCTAGCTTTTGTTTGGTGTAAATCTAAGCATCATATACTCATTATACTTTATATT TTTTTCTTTTCTTTCCAATTGGAGAGCTTCTTGTAAATACAAACATCTAGGTGCTGAGGTTTCC CCTTATTTCATCTAACAATGAAATGTTTCTTATTAAAAAAAGAAAAAAGACCTAGCAGAGTTCA TGCCACAAGTACCTTGTTTCCTCAATCCTCCATTTCTTCTATCGTGTGTATTGAAGGTCTGTCG TTGTCAAAACTCGTGCTAAGAGGACACCACTTCTCTTCTCCATCTCATAAAGGTTCCCGTTGAA GTTGAGTTTTACAATTATCTCCCACTTATCTTACATGTATGCTAGCATTCTGTTGTGGCTCTTT TTTGTGATATATAATTAAATTTGCCTTCAACCACCAACTTAAGCTTTTGGATGAATTGGTGGTT TAATATGGTATCAGAGCAGGTGGTTCAGAGAGGTTCTATGTTCAAGTCCCTGCATTGTCGTTTC CTCCCAAATTAAAATTGATTTCCACTTGTTAGGTCTTTCAAATATTTCAAATCCACAAGTGAGG AGGAGTGTTAGTGATATATAATTAAATTTGCCTTTAACCACCAACTTAAGCTTTTGGATGAATT GGTGGTTTAATAGCTCTAACCATCAGGGGTTGGCCTTATAGTGAAAAGGAGACATAATCTTGAC TCTCAATAAATGGCTAAGAGGTTAAGGATTCAATCTAGTGGTCACTGGTCACCTACCTAAGAAT TAATTCTCTACGAGTTTCCTTGACACCCAAATGTTATAGGTCAATTTCCTTGACACCCAAATGT TATTAGTCAAGGTCCGCAGATGTTGACTTGGATACTCACGGATATATATAAAAGTATCCTATTA TGGCTCTAATGAATCAGGGGTGTGTGAATATTGTAAAATAGATTTTGTGGACCTCCCTACCATT CAACTGATCTTTGCAGAAGAAAATTCTGTGGCCACTGGCCATCTTCCAGTCTGATACAGAAGTT AGGATCTTCTTTGCCTTCTTCTATATGTAATTTAATGAGCAGATTCAGAAACTATTCTATTACA CCCATATTTTCCTGCGTTACTTCTTGTATACTTATAGTTGGTTAATTCATTGATTGTTTGTTAT TATAATCTGTGCCTTCTATGCACAATGAAGAAATTGATCAATGTGTGTCTCAACAGCGATCTAT TTAATCCTTCCCATGTACTTTCTTATCTATAGAACTCAATATTATTCTATGATTTTGCATCTTT TTTGTGTACCCAAAGTTTATCATGGAATACCTTTTCAGATTCTGCTATCTTAATGATAATGTAG GTATGTTATTTCTTTCCTCAAGGATCATAGCAAAGAAGTTTACAACGAGGTTCGGACGGCATAT ATTGATACAATGAACAAGGTAATTGTTTAAGACATCATTTGTTTTTGTAAAGGTGTGGATGGTT TAATTTCGTGTTGTGGAAGAGGAAGACACCAATTCAAATCCTTAGACAATATATTACTCAGATA ATTTATGCAATTATTATTTTGAGTTATCTCTATGTATGGATAATTCATGGTTTTCTTGATTTAT TTTGACCTGGGAGTTCCAAATCACTGATGTTGTCATGATGTGATGCTAGTTGCCCACTATGTTA AGAGTATATTGCCTCTTGGACACAACAACTCGCAATGGATTTTTTGTCAGACTTTGTCAGTAGT TGTACCATGTAGGTAATGAGACCATATGAATACTTCAAACCTTCTAGGCATGTTAGAGTGTCAA TAAGTAGTTCATCAACTCCAGAGCACTGAAAGTGACTTAACATTGAAGGGATCCAATCAAGTTA GATGGTTTCATATGAATTTTTAAGTGCTTAAAAGCACTTAGAACGTCATTGCAAACATACTCTT AAATTATTTTGAAATCCACAAACAAATAGAGGAAAAATATATAAAAAGTGGTAATGATTTGGAA CCAATTCTTCACATTCCTCTTAAGGGAATCTATCCATGGGAGAGGAAGATGTGCTTATCACTCA TTCCCAACAGAAACTTTGGCATTGGTTTCTATATTCCCTGCAGAAGATGAAGAAATTTCTTATT GGTTTCCACATACCTCACTTTTCATTCTCTAATTATCACTTATTTCTGGCAGAAATTTTTTGTG AGCATGGAATCGAGTAGGCTGCTATGATATCTCTTGTGATTGATGTAACAAACAGTAAGTACTA AAAATGGTCCAAGGGGTGATAAGGACTTATCTATTCAAGATATTGGAACATAGTACAGACTACA GAGAACAAATTTTCTGCATGGTTCAAGTCTACGCTATTTCTTATTTTGGAATTGATATGGCATT ATGTTGACACTATTCCAATGCCTATTTAATTGGACATAAGAATAAATGATTTGGGGTATTTTTA GATCCAACAACTACTTTTATCTCTTTCTTATGATTACTTGCCAATGTTGCCATGCGTTTTTTTG TCCAATACATAATTGCTTTTCAGCAGGCTCACTGACATGTTTTTATGCATCAGTAAAAATTGTT TCCTGTTTTTAATGGGACAATCATTTATCTAATGAGTATTGAGTTATTGATGTTGTTTTTTTGA AGAGGAAACGAGTCTCAATATTATTAATGTTTAAATATTTGAGTTATTGATGTATTGAAACTAA TATTCATGTTTCTCAGGTTTTGAGTGCACATTTTCGTGCCTACATACAGGCACTAGAGAAATTA CAGTTAGACATAGCGACATCTAATGATCTGATTGGGGTGGAGGCTAGAAGTTCAGGTCTTTTCT TGAGAGGCAGGGAACCACTGAAGAACCGATCTGCTGTTTTTGCACTTGGTGATAGAATAAAGAT ATTAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.097188508

Conservation Information
Conserved circRNAs	NA
PMCS	0.097188508

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							20572035-20576783(+)
						
						Potential amino acid sequence
						
							MIDIIVDGEVNDEYLRTLEILSKKLVVAEVDPMIKNSKALKDVQPELEKLRQKAVSKVYDFLVQ
KLQALRKPKTNIQILQQSVLLKYKYVISFLKDHSKEVYNEVRTAYIDTMNKVLSAHFRAYIQAL
EKLQLDIATSNDLIGVEARSSGLFLRGREPLKNRSAVFALGDRIKILKVAESKLAKFVEEIIVP
PRMIDIIVDGEVNDEYLRTLEILSKKLVVAEVDPMIKNSKALKDVQPELEKLRQKAVSKVYDFL
VQKLQALRKPKTNIQILQQSVLLKYKYVISFLKDHSKEVYNEVRTAYIDTMNKVLSAHFRAYIQ
ALEKLQLDIATSNDLIGVEARSSGLFLRGREPLKNRSAVFALGDRIKILKVAESKLAKFVEEII
VPPRMIDIIVDGEVNDEYLRTLEILSKKLVVAEVDPMIKNSKALKDVQPELEKLRQKAVSKVYD
FLVQKLQALRKPKTNIQILQQSVLLKYKYVISFLKDHSKEVYNEVRTAYIDTMNKVLSAHFRAY
IQALEKLQLDIATSNDLIGVEARSSGLFLRGREPLKNRSAVFALGDRIKILKVAESKLAKFVEE
IIVPPRMIDIIVDGEVNDEYLRTLEILSKKLVVAEVDPMIKNSKALKDVQPELEKLRQKAVSKV
YDFLVQKLQALRKPKTNIQILQQSVLLKYKYVISFLKDHSKEVYNEVRTAYIDTMNKVLSAHFR
AYIQALEKLQLDIATSNDLIGVEARSSGLFLRGREPLKNRSAVFALGDRIKILK
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to salt stress in root

Functional Information
Coding potential	Y
Potential coding position	20572035-20576783(+)
Potential amino acid sequence	MIDIIVDGEVNDEYLRTLEILSKKLVVAEVDPMIKNSKALKDVQPELEKLRQKAVSKVYDFLVQ KLQALRKPKTNIQILQQSVLLKYKYVISFLKDHSKEVYNEVRTAYIDTMNKVLSAHFRAYIQAL EKLQLDIATSNDLIGVEARSSGLFLRGREPLKNRSAVFALGDRIKILKVAESKLAKFVEEIIVP PRMIDIIVDGEVNDEYLRTLEILSKKLVVAEVDPMIKNSKALKDVQPELEKLRQKAVSKVYDFL VQKLQALRKPKTNIQILQQSVLLKYKYVISFLKDHSKEVYNEVRTAYIDTMNKVLSAHFRAYIQ ALEKLQLDIATSNDLIGVEARSSGLFLRGREPLKNRSAVFALGDRIKILKVAESKLAKFVEEII VPPRMIDIIVDGEVNDEYLRTLEILSKKLVVAEVDPMIKNSKALKDVQPELEKLRQKAVSKVYD FLVQKLQALRKPKTNIQILQQSVLLKYKYVISFLKDHSKEVYNEVRTAYIDTMNKVLSAHFRAY IQALEKLQLDIATSNDLIGVEARSSGLFLRGREPLKNRSAVFALGDRIKILKVAESKLAKFVEE IIVPPRMIDIIVDGEVNDEYLRTLEILSKKLVVAEVDPMIKNSKALKDVQPELEKLRQKAVSKV YDFLVQKLQALRKPKTNIQILQQSVLLKYKYVISFLKDHSKEVYNEVRTAYIDTMNKVLSAHFR AYIQALEKLQLDIATSNDLIGVEARSSGLFLRGREPLKNRSAVFALGDRIKILK
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to salt stress in root

			
						 Other Information
					
						References
						Zhu et al., 2019

circRNA

Detail information of Csa2G402000_circ_g.4

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