Detail information of Os10g0167500_circ_g.1


General Information
CircRNA Name Os10g0167500_circ_g.1
ID in PlantcircBase osa_circ_006290
Alias Os10circ01319
Organism Oryza sativa
Position chr10: 4657735-4658297  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, SMALT, Segemehl
Parent gene Os10g0167500
Parent gene annotation Hypothetical conserved gene. (Os10t0167500-00)
Parent gene strand +
Alternative splicing NA
Support reads 2/1
Tissues leaf/shoot, root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os10t0167500-00:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCCCTCTTTCATGTTTTCGTTAGGTAAATGGCAAAAGTGTCAGAGTATCTGTTGCTGAACCT
CATAGAAAATCTAGTGAGCAGAAGGCTCTTACGAAGacatgaaggaaatagctgacaaggattc
tgaagaagctcaagatgaagataaacatggggataatcataagggtgaagttgctgaccaattg
agcaatga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACATGAAGGAAATAGCTGACAAGGATTCTGAAGAAGCTCAAGATGAAGATAAACATGGGGATAA
TCATAAGGGTGAAGTTGCTGACCAATTGAGCAATGATGAGGATGTTGGTGGACGTGAAAATGAT
GAATCACCAAATGATGAACTCGACACCTCATTGCTTGTGCTGGATTCAGTTCCAGATGGGAATG
ACAAAACCCTTGAATTATTTGTCGGTGGCTTGCCTAAGGACTGTGTTGAAGAGGACATTAGAGT
GGTGTTTTCTCAATGTGGAGAGGTTGAATCTATTAGAATAGTTAAAAAGAGAAAGCGCATTGCA
TTCGTTCGTTATGCAGATATCAGTGCCACAAAGAAGGCTCTTACTGAATTTAAGGATGGAATCA
AGGTTTTGATTTTATGATGCTTTCAGTCCTTTGAATGGTTTGACTTTGAATCAGTCGTTGCTTA
TGGAGTAATGATCGTATTCCCTCTTTCATGTTTTCGTTAGGTAAATGGCAAAAGTGTCAGAGTA
TCTGTTGCTGAACCTCATAGAAAATCTAGTGAGCAGAAGGCTCTTACGAAG
Conservation Information
Conserved circRNAs osi_circ_008810
PMCS 0.349868976
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017