Detail information of AT1G48850_circ_g.3


General Information
CircRNA Name AT1G48850_circ_g.3
ID in PlantcircBase ath_circ_006363
Alias NA
Organism Arabidpsis thaliana
Position chr1: 18066748-18066840  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI-full
Parent gene AT1G48850
Parent gene annotation Chorismate synthase, chloroplastic
Parent gene strand -
Alternative splicing AT1G48850_circ_g.1 AT1G48850_circ_g.2 AT1G48850_circ_g.4 AT1G48850_circ_g.5 AT1G48850_circ_g.6 AT1G48850_circ_g.7
Support reads 1
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G48850.2:1
AT1G48850.3:1
AT1G48850.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCAACTCTTCCAATGGTCTCTCTAGCTGAAGATCTTCCTCCACCctcagttcctgcaaattg
cttcaaaattttcttggccaaagctccag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 93
Transcript exons: 18066748-18066840
CTCAGTTCCTGCAAATTGCTTCAAAATTTTCTTGGCCAAAGCTCCAGGAGCAACTCTTCCAATG
GTCTCTCTAGCTGAAGATCTTCCTCCACC

Genomic sequence CTCAGTTCCTGCAAATTGCTTCAAAATTTTCTTGGCCAAAGCTCCAGGAGCAACTCTTCCAATG
GTCTCTCTAGCTGAAGATCTTCCTCCACC
Conservation Information
Conserved circRNAs NA
PMCS 0.2374561
Functional Information
Coding potential Y
Potential coding position 18066809-18066837(+)
Potential amino acid sequence MVSLAEDLPPPSVPANCFKIFLAKAPGATLPMVSLAEDLPPPSVPANCFKIFLAKAPGATLPMV
SLAEDLPPPSVPANCFKIFLAKAPGATLPMVSLAEDLPP(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017