Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G24350_circ_g.2 |
ID in PlantcircBase | ath_circ_004173 |
Alias | Chr1:8639206|8639506 |
Organism | Arabidpsis thaliana |
Position | chr1: 8639206-8639506 JBrowse» |
Reference genome | TAIR10.38 |
Type | ei-circRNA |
Identification method | CIRCexplorer; CIRI |
Parent gene | AT1G24350 |
Parent gene annotation |
Acid phosphatase/vanadium-dependent haloperoxidase-related prote in |
Parent gene strand | - |
Alternative splicing | AT1G24350_circ_g.1 |
Support reads | 5 |
Tissues | seedling |
Exon boundary | No-Yes |
Splicing signals | TG-GA |
Number of exons covered | AT1G24350.5:1 AT1G24350.1:1 AT1G24350.4:2 AT1G24350.3:2 AT1G24350.2:2 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.123211517 |
Functional Information | |
---|---|
Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | th-miRf11152-akr NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to methyl jasmonate |
Other Information | |
---|---|
References | Zhang et al., 2020 |