Detail information of GLYMA_07G108700_circ_g.1


General Information
CircRNA Name GLYMA_07G108700_circ_g.1
ID in PlantcircBase gma_circ_001744
Alias Gm07circRNA542
Organism Glycine max
Position chr7: 10692229-10696888  JBrowse»
Reference genome v2.0.38
Type   ei-circRNA
Identification method Tophat
Parent gene GLYMA_07G108700
Parent gene annotation hypothetical protein
Parent gene strand -
Alternative splicing GLYMA_07G108700_circ_g.2
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   TC-CA
Number of exons covered KRH48738:9
KRH48737:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCAACCACTTCTCAAGGTCAAGAAATTCTTTTCTTGATGCAACAGCTGCTAACCTTATACTAT
AATAATAGGGAATAATTTCCACCACAGATGATAGAAcctcaataggaatttctcttttctcagc
agcagcaaccaaagtttcaatgttcaaggcagatccaaaccctacatcagatgcacagttcaaa
ggagcacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCAATAGGAATTTCTCTTTTCTCAGCAGCAGCAACCAAAGTTTCAATGTTCAAGGCAGATCC
AAACCCTACATCAGATGCACAGTTCAAAGGAGCACGACATGTATTCACAAAATGAAAGCAAAAA
TAAAGGCTAATGCCTTTATGCTAATCAAGAGAAACTGTTCAAGAGTAACAGAAATATACTGGCA
GAAGTAGTTCCACGGGAAGGACGAACAAAACCAGGAGAAGACGAAGATAGCATTGATGACGTGC
TGACTGTGCTATGTAACTGCAATTATAGCAACAGAATTAAGTCCCAGTATAAAATAATGAGCAT
GAGCAATAGCAATACAATAAAGCATGAGAAGCAGAGAAATTGAATTAGTATAAACCAGAGTGTA
TTCTTTGAGAAAATCACATACAAATTTTGCAGTTCAATAGAGACTACATGAAAATCACTGAGTA
TGCAACAACCAACAGCAAAGAGTTACAGTTGAAACTAACAGCTTCTTTAACTGAACTGTAGAGT
AGCCTTCTCAGCTACCCATGTATGTCTCCAACACAATAAAAGCAAGAATACACAAGACTACAAG
AGGGAGAGGCAACGGGAGAGGGAGAGGGAGAGAGAGAGAGAGGCACATCATTCACGTCATGTTT
TTAAAACAATAAAGAAGTATAATACCTTATTGGTACTAGAAGCATCAGTAGGTGTTAGTACTGA
AGATTGCCCTAGAGAAGATAACAATGGTTTTACATCCGTAGATGAACCAACAGAAGCTTTGAGA
CGATCATCCAACGGATTTTCACGTCGTTGTTGAAGCTGCATTGACAAATGTTGTTGCCCAGGTT
GTATGACGCTAGAGCCACTGAGCTGCTACAAGGATACAGCATGAACAAATATGTTACCTTAAAC
AGATAAATAGACAGGAAGTGAAAGGATAAGCAAATAACTTATCTATTATAAAGAGGAACATAAT
CTTGTTATTCTGCTATGACCTTTATCTATTAATAACAGGTTTCTTTCCCTACAATTAGCACAGA
AAAAATACCACTGCAATAGGTCCCACAGAATAATCATTAACAACCTATCATAATATAGTCACAT
GTAAATGGGAAACAAAAACACCTCAAAGTTATGTAGCTGACCTTCCAGCCATAGGTTCAGCAAA
TTACTATTATTCAGAGAAGCAGCATAGCCTATAATATAAACGAGATTATAAAACAGTTTTCCGG
TTACCCAGTTACACACTGAATGAAATACACAATACTCAATATCTAATCAAATGAAAACATCAGT
TACTGAAGGAAATACGTAATACTCTCAACATCTAATCTTATTAAAAACACATAATGGATATACA
AATTTACTTAGAAAGCTCACACCAATCTTACCTAATGCTCAAGCTAAAGAACAGATGAGTTAAT
AACCAAAAAAAAAAACAAAAAGAACAGTCTGCACAACAACCAGGTTAGTTTAATGAGAGTTTCA
GATAGCAGTAGGAATATATAAGAAAACAAAGATAGTATAAAATGTTTACAATTAATGGTTTGTA
AATTGTAAGTATTAGAAAAAATATATACTGAAGGTGGGTCATGGGTGCCAGAACTCATTTAACA
TCAAACAACACAACAGCTTCAAGCGTAAAATTAAAATCAAAATCTTATATTGAGCCATAAGTTA
GAAAAGAAAATACAAAGGGAAAAAAGAATTTACTTTTACCTCTACATGCCCTAATGAAGCCTGT
GCAGAATGATGGTTACTAATAACAGAAGCATGACTCGCCCCATCAACATCTGAATGACCAGAGG
AAATCCTGGCAAGAGCCTGCTCAATGAAAGCAACTATTTCTGAATGTGTACTGCGCAAATGGGA
AATTTGAAGAATATGATTGCAATACTGAGGCCACTCAATAAGACGATCCACAAACTGCTCCAAT
GCCAGACTTCCAAACAAAAACATCTGTAACATATGAAAGCAAGGTCAACCCTGATATTGAATGA
AAACTTGAAAGAAATTCATTCTTCAAAACAACACAAACTTTAGAATCTGCAGGCTTGCGCAATG
CATCAAGAACATAACGAAGAGCAATCCCCAAAGATAGATGAGTTACAAGCTGATGCTTGATCAC
AGAACCTGAAACATGTAAAAAAAAAGCATTGTAAAATGGTTCAAAAAAAGGTCTTAGAGAATAT
GCATATAATTCCAAAATTGTGCAAAGATAACGTTAGCTAAAGCAAGCAGTGTGCAAGCTCAAAA
ACATCAAGTTTAATAATACACACCAGTATGATAAAGAAGTCCTCTTAATTTGTACACACTACAT
GCAAGAGATGTTTACTTACATGCAAACAGAATTACTAAAACACATTATCATCTAAATGCAGTTA
TGCTGCCTTATGCATATAATATTTCACCTCAGTTCAATGTATGCCACTAATAATTACAAAGAAG
ATATGTTTAATAAAAACACCTCAATAAATAAGTGAAGGCAATGTCAAACAGTAGCAGTGCAGGA
ATGAAGTATTTCAAAAGGATGAATATGGGTGAGCTCCACTAGGCTTGGTAAAAGGCTCAATTTG
ATACTCAATGGTATTAAGCTCAAGTTTGCGCAATTATATATAATTTATTTTCTACATTCCTTAT
AACAAATTAAGTTATGCAGATATTTAATATTACTAATTAAATGACATGATTCATTAGTAGTCAT
TCACTCATTACTCAAAGTCCAACATCTTAAATTACTTAAAAATTTTAGAAAATCTCCAAATCTA
AATCAAGCTCAAAAAGGCATGGCTCATAATCAAATTCGGTTATTTCTTGTTCAAGCTCAACATA
GATTCAATCCCAAAGTTTAAAATGATTACAAGATGAACACATACGAACATAACCTTCCATTCAA
AACATTTTCCATAAATTGCAATTTACCAATTCCGATCAACAGTTGCCTAGTTGAAACATTATCA
CAAACCCAAATACATTGGTGATCATAAAAAGAACTTAAACCCATCTGCAATGTCAAAAGCAAAC
TTACCAAAGAGAACTGCAGCAATTTTGAGTTGTCTTTCAGGATACTTTGGGAAAAATCTATACT
CCTCAAACAAGTTTGCAATCATGCATTCAAAAATTGATTTCTCCCTGTTAACTCACACCAACAT
TGACGCAATTTTAGCACTTAACCATAGACCAAACAATAATTACATTATTTGGAAACAAAGGATA
TCAAAAAAAGAGATCATATAAACATTCCCTACACACCTTTTCCTTAACAATATATAATTCTTGT
AAAACTCCCAATTAAAGTTTCCTTTAATATTAAATATAATAATATATACAATTAAAAATGAACC
CACATAGTAAGAATCAACTTTCTTATTATAAAGAATTTGTGCACGTTTTCAACTCAAGCACAGT
GGTAACAAACTACAATGGGACAAGAATATACAGATCTGTTACAGCCCACATGATAGAATTTTAG
TTGGTCCAATCATATATAACATTAAGTTGAAAACTTAAAGAAATTGATTAACAATTGTGATCTT
CAACAGGTTCAAGGATCAAACATTACTGTATTTTTTTAATGAATGATTTGCAAAAATATAAAAA
GTAGATAGTTCTATATCTAGTATCTAAAGTTGTAGCAATAAAAATACATTAGATGCCATTGACA
GAATTTGCAAACAAGGGACAAGAACATACAGATATGAATTTGACCGTGAAAGTTTAAATTTATG
TTCACTAAGGTAAGAACTAAGGAGCATTAACAGATAGAGTGAGCATAAAAAACTTCGATACAAA
GGGTACTGCCTATTACATCAACAAAAAGTTAAGTTTTTTTTTGTTTATTAGAGCTTAAAAAATA
ATACAACACTACAATGTTATTTACAGTAATGGATTCGCCAGATGAAAATTTTAAAAAACATCAC
CTCTTCACTGAAGATTCCTTGAATCGTGTAAGCATCTGTACCATTGCATTAATGGTTAACTGAT
CAGAAAACATTTGATGGAAGTAAGAGTTTGCTTCAGCTTCAATGTCATCCGCATATCCATCAGA
AGTAGATGAATCAGCTGTCCCACCATTCTGAAGCCTTGGATTTGTATCTATCATAGATATATGA
AGCCTCTCCAACTCCTCAGAAAGTTGTCTAGAAGCAACCAAGTCAGTATGAGATTTAAGAACCT
GTAATCAGAAAAGGTCAGATCCCACAGTAAAAAATGAAAATCAAATGAGGCTAGGACAGGCAGA
GAAAGCAAATGATTGAAGTATGACCTTCAAGATGGTAGCAGTTGCCTCGGCATATAGACTCAGA
ACAGCACCAGACTGATGAAATGATTTGCCAGAAAGGTTCTGCGATCCACCAAAATGGGTATCCT
TTAAGAACTTGAGGCACTCCTGCAGAATAAGCCTAACAATGTCAGCCACTTTTCTGCTACAATA
GATTCAGAGTACAACTAAAAATACACAAGGCCAAAAGACTGCATAAATCTGTAATACTACTGTC
TTTAAAAAATTTAAAATCAAGGCATGAGAGAAGGCATTATTACCTCAAAAAAGGCTTCCTTGTA
TGTAGTTAAGTTGCTACTCAACCACTTCTCAAGGTCAAGAAATTCTTTTCTTGATGCAACAGCT
GCTAACCTTATACTATAATAATAGGGAATAATTTCCACCACAGATGATAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.148259789
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017a