Detail information of AT2G03780_circ_g.1


General Information
CircRNA Name AT2G03780_circ_g.1
ID in PlantcircBase ath_circ_012712
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1152710-1154111  JBrowse»
Reference genome TAIR10.38
Type   u-circRNA
Identification method CIRI, circRNA_finder
Parent gene AT2G03780
Parent gene annotation At2g03780
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered AT2G03780.2:5
AT2G03780.1:6
AT2G03780.3:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGAGATAATCAGCGTAAGTAGAGAAAGCATCTTTCATTGAGGATTCAGTACTCATCGTCCTAG
CTTTCTTAACCAAATGTTCAACACCACTCTCTGCAAttttaatcattcgacatcagcagctccc
aataggtatgatgttggtgcattatctccaagcagtggaatatactctaatcctctcacgtgaa
cgctaaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTTAATCATTCGACATCAGCAGCTCCCAATAGGTATGATGTTGGTGCATTATCTCCAAGCAGT
GGAATATACTCTAATCCTCTCACGTGAACGCTAAAGCAAGCTAATAAACAAACAAACAAAAAAG
AGTTACAAAAACGTATTGGTTGGTATCTAATAGTGTGCGGATATGAGATTTGTGCATACCGTTC
TCTATTTTGATCACACTTTGAAGCATCACTTCCATCTTGGATTTCATGTCATAACTGTCATCCA
TCTTTGGCACAACTAGCATTAGTTCCCTATGAATCTGTCGAACAAACTGACAAATCCTCTGCGC
GAATTCGATTTCACCGTCTGATATGCGACCAATTGCCATCCGCATTAGCTCTCCCGTCAAATCT
GCAAGCTGTGCAAGTAACAAACAATAATCAAACATAATTCAGAACTCCAAACAATAGAGAACAT
CTTTGACAGTAAGTATTAACCATAAATAAAGATGGTCTAAAAAATACCCCAAGAATATAGTCGA
GGATATTGATCTGCAACGGCTCTAAAGAAGGGTCACTAAGTGGTACAAGCGTTGTGTTAATCTC
ATCGAGAGTACATAGCGTCCCAGACAAACAGAACTTATAAAACGTTGCAGCTTCAACATATTCC
TGCACCTGTAAGTTACACAAAACCACAAAACATATCAGTTAAACCATTAACCAAAATCGTACCA
AAAGATGAATGATTTTCCGTTTCACAAACCCCTGGGGAATAAGCACGTCTCAGCTTCCAAAAAT
CAGTCCCTTGAAGCTCTTTCATTAGCCGGGCAAAATGTTGATCCCTCACTGCTTCTAAATCCTT
CCCTGCTTTCTCCAATACCTCCTCTTTGTTGTCTTTACTGAGCCTGCCATATAACAACATAGTA
AACAAAACAAACAAACAGTATCTTGATGAAGAACACAACAAAAACACACAAAATCTTGATGAAC
ACAAACAAAAACAACAGAGGTGTTGAAATTACCTGTGAACCTGAAAGATAACTTTTTTGCTGTT
CATTGTGATATCACGACTTACCTTCACCACTCTTTCTCGCTTCTCATTCTACAAAGAAACAATC
ATAGAAACCAGATAAAGCCTCCTCCTTTATTCTCAATTCGCTATAGAATCTATTACAAAACCCA
AGTTGCAACATGAAAGATCATTTCTTTAGTTGTCTAAACCTATAAACCTTACTTAAAGGACTCA
ATCCCATGACGCAAAGGTTCAATCTTTATAAACAAACAGATAAACCCAGGAGAAACAATGGAGC
AGAGGAAACACTTACGAAGTTATTGAGATAATCAGCGTAAGTAGAGAAAGCATCTTTCATTGAG
GATTCAGTACTCATCGTCCTAGCTTTCTTAACCAAATGTTCAACACCACTCTCTGCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.161710835
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017