Detail information of BGIOSGA011089_circ_g.1


General Information
CircRNA Name BGIOSGA011089_circ_g.1
ID in PlantcircBase osi_circ_004690
Alias 3:8729800|8731120
Organism Oryza sativa ssp. indica
Position chr3: 8729800-8731120  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA011089
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA011089_circ_g.2 BGIOSGA011089_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA011089-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTTCGGTCATTGCGAGGCCATTTCCAGAGCAGATGAACAGCATTTGAAGCTAAAGCCAAGAT
AGCGACACCAGAATTTGTGTAAATAAGTCTTGAAATctgatattctgaggaagataggatgctg
gaagaattcgacattggagtctcaaactcgatgcattaaatatgcaaacagtggcatccagaaa
gcttgcat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATATTCTGAGGAAGATAGGATGCTGGAAGAATTCGACATTGGAGTCTCAAACTCGATGCAT
TAAATATGCAAACAGTGGCATCCAGAAAGCTTGCATAAATCAATTGACTATCGCAGGAGAACAT
GGCATGCGTTATTGGAGAAGAGTTCTCACGGACAGGCCACTGAAAGTAAAGTTAAGGTGAGTAA
TGAAATAGCCTTTGTAGTTAACTTGAACTGCACGTGAAGAGAGAATTTACCTGCTTCACGGGTT
CTAATTTTGTAGTTTCATATATGGCAATCTGGGTCTCATGCACAACAAGAAAGTGCAATTGATC
CTGATGGAACTGAACACGTGTGTCTAAGATTATAGATGATGGACGACTTGATGGTATCTGTAAC
ATTCTGCTCTTTAATTTATCCCACCCATCTGTGCTCCACACACATATCTACAAGGAGGAAAAGT
ATAAACAGTAAAGACAAACAGAAGTGGCTTGCTCTATGGTGTGAGTTGATAGTTCAGTAAATAA
CCTGCGCATCAGCTCCAGAAGAGACTAACACATTTAATACATTTGAAAAAGCAAGTCCAGTAAT
TTTCTTAGAGTGCCCTCGAAGTTTGCTTTTGACCTGTGCAAAGAATCAAAAAAAAAAATTGATT
GAATCTTGTTCCATTTTTTATAAGAATAACGCAGAGCAATGCCATTAGATGTGCTAATACCTCA
TCAATTCGAACATTGTAGATTTGGATGGTTGAGTCATCCATTCCAATTGCTATAATGTTGTTAT
CTTGAGGATGGAAAGCAAGAAACGTTGCCGCCGGCGGCGGAGGCATAAAAGTTGTCATCGTCTG
CAGTCACCATATGATTAAAGTTCAATTTCTACATAAGAGACAAACAATAGAAATAAACTTGTAA
CTAACCTTAAAAGTCATCATGTTGAACAGAGATATTTTCCCTCCAGATGCAGACATGACATATG
AATCATTCTTTGACAAAGCAAAGCAATGGACAGCTTCTTCAGGGTTGTCAGTTATGTCATTAGT
CATGAGGATGCCGCTTGGAGGTTGCCATAATTGAGGAGAAACACTTGCAGTAGCCTAGAAGAGT
CGATAGCAAACATAAAAAGTTAGTAACAATCATATGCACAAATTGCTTGCCCCTGGACCTGGTA
TACAGAGCAGGTAGGTAAAACTGAGCATATTTATGTGCGTAAATAATCCAGATTTAACCTTTCC
ACTTGAGTTTCGGTCATTGCGAGGCCATTTCCAGAGCAGATGAACAGCATTTGAAGCTAAAGCC
AAGATAGCGACACCAGAATTTGTGTAAATAAGTCTTGAAAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 8730828-8731074(-)
8729843-8731074(-)
Potential amino acid sequence MTNDITDNPEEAVHCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN
NIIAIGMDDSTIQIYNVRIDEVKSKLRGHSKKITGLAFSNVLNVLVSSGADAQICVWSTDGWDK
LKSRMLQIPSSRPSSIILDTRVQFHQDQLHFLVVHETQIAIYETTKLEPVKQWPVRENSSPITH
AMFSCDSQLIYASFLDATVCIFNASSLRLQCRILPASYLPQNIRFQDLFTQILVSLSWL*(-)
MSNSSSILSSSEYQISRLIYTNSGVAILALASNAVHLLWKWPRNDRNSSGKATASVSPQLWQPP
SGILMTNDITDNPEEAVHCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFH
PQDNNIIAIGMDDSTIQIYNVRIDEVKSKLRGHSKKITGLAFSNVLNVLVSSGADAQICVWSTD
GWDKLKSRMLQIPSSRPSSIILDTRVQFHQDQLHFLVVHETQIAIYETTKLEPVKQWPVRENSS
PITHAMFSCDSQLIYASFLDATVCIFNASSLRLQCRILPASYLPQNIRFQDLFTQILVSLSWL*
(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021