Plant Circular RNA Database

Detail information of EPlOSAG00000021470_circ_ig.1

			
						 General Information
					
						CircRNA Name
						EPlOSAG00000021470_circ_ig.1
					
						ID in PlantcircBase
						osa_circ_025126
					
						Alias
						Os04circ12955/Os_ciR333
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr4: 30632809-30635258  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ig-circRNA							
									
						Identification method
						CIRI, SMALT, Segemehl, circRNA_finder, find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							NA						
					
						Support reads
						6/123/2
					
						Tissues
						leaf and panicle/root/seed
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	EPlOSAG00000021470_circ_ig.1
ID in PlantcircBase	osa_circ_025126
Alias	Os04circ12955/Os_ciR333
Organism	Oryza sativa
Position	chr4: 30632809-30635258 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ig-circRNA
Identification method	CIRI, SMALT, Segemehl, circRNA_finder, find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	NA
Support reads	6/123/2
Tissues	leaf and panicle/root/seed
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTCAAAGGTCTGACAACCTTCTGCAGAATTTCATGCCGCTCTGTCAAACTTTGGTGGATAACAC
TGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACATaaaacattgtatttgcaaatataagtgt
ttctccctttaggcctgagatgtcagtcttcataagatgtgaagggatgattgacacattcttt
ttctcccc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 173
Transcript exons: 30632809-30632914,30635192-30635258
AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG
ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTTGCCGCTCTGTCAAACTTTGGT
GGATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT
Transcript length: 177
Transcript exons: 30632809-30632879,30635153-30635258
AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG
ATGTGAATGGCCCTTCAAAGGTCTGACAACCTTCTGCAGAATTTCATGCCGCTCTGTCAAACTT
TGGTGGATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT
Transcript length: 197
Transcript exons: 30632809-30632914,30635168-30635258
AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG
ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTCTGACAACCTTCTGCAGAATTT
CATGCCGCTCTGTCAAACTTTGGTGGATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGC
AACAT
Transcript length: 216
Transcript exons: 30632809-30632946,30635181-30635258
AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG
ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACC
TTAACATTCTGCAGAATTTCATGCCGCTCTGTCAAACTTTGGTGGATAACACTGGTGTCTCCAG
CATAAAGAATGTCAAAAGCAACAT
Transcript length: 217
Transcript exons: 30632809-30632935,30635169-30635258
AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG
ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACT
GACAACCTTCTGCAGAATTTCATGCCGCTCTGTCAAACTTTGGTGGATAACACTGGTGTCTCCA
GCATAAAGAATGTCAAAAGCAACAT
Transcript length: 218
Transcript exons: 30632809-30632926,30635159-30635258
AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG
ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTCAAAGGTC
TGACAACCTTCTGCAGAATTTCATGCCGCTCTGTCAAACTTTGGTGGATAACACTGGTGTCTCC
AGCATAAAGAATGTCAAAAGCAACAT
Transcript length: 226
Transcript exons: 30632809-30632841,30632849-30632965,30635183-30635258
AAAACATTGTATTTGCAAATATAAGTGTTTCTCGCCTGAGATGTCAGTCTTCATAAGATGTGAA
GGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACCTTAACAT
TCTTCAGATCATTATCATCATCAGAATTTCATGCCGCTCTGTCAAACTTTGGTGGATAACACTG
GTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT
Transcript length: 226
Transcript exons: 30632809-30632957,30635182-30635258
AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG
ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACC
TTAACATTCTTCAGATCATTACAGAATTTCATGCCGCTCTGTCAAACTTTGGTGGATAACACTG
GTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT
Transcript length: 235
Transcript exons: 30632809-30632963,30635179-30635258
AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG
ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACC
TTAACATTCTTCAGATCATTATCATCACTGCAGAATTTCATGCCGCTCTGTCAAACTTTGGTGG
ATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT
Transcript length: 237
Transcript exons: 30632809-30632966,30635180-30635258
AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG
ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACC
TTAACATTCTTCAGATCATTATCATCATCTTGCAGAATTTCATGCCGCTCTGTCAAACTTTGGT
GGATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT
Transcript length: 246
Transcript exons: 30632809-30632950,30635155-30635258
AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG
ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACC
TTAACATTCTTCAGGCCCTTCAAAGGTCTGACAACCTTCTGCAGAATTTCATGCCGCTCTGTCA
AACTTTGGTGGATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT
Transcript length: 268
Transcript exons: 30632809-30632925,30635108-30635258
AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG
ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGGACGATGGAT
GTTCAGGCCACCTGTTGGAACTAATATTTCCAGATGGCCCTTCAAAGGTCTGACAACCTTCTGC
AGAATTTCATGCCGCTCTGTCAAACTTTGGTGGATAACACTGGTGTCTCCAGCATAAAGAATGT
CAAAAGCAACAT
Transcript length: 303
Transcript exons: 30632809-30632955,30635103-30635258
AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG
ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACC
TTAACATTCTTCAGATCATCTGGCGGACGATGGATGTTCAGGCCACCTGTTGGAACTAATATTT
CCAGATGGCCCTTCAAAGGTCTGACAACCTTCTGCAGAATTTCATGCCGCTCTGTCAAACTTTG
GTGGATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT
Transcript length: 305
Transcript exons: 30632809-30632867,30632870-30632970,30635114-30635258
AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCAAGAT
GTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACCTT
AACATTCTTCAGATCATTATCATCATCTGCCGTGGATGTTCAGGCCACCTGTTGGAACTAATAT
TTCCAGATGGCCCTTCAAAGGTCTGACAACCTTCTGCAGAATTTCATGCCGCTCTGTCAAACTT
TGGTGGATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT
Transcript length: 311
Transcript exons: 30632809-30632979,30635119-30635258
AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG
ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACC
TTAACATTCTTCAGATCATTATCATCATCTGCCGCCCTGTGAGGTTCAGGCCACCTGTTGGAAC
TAATATTTCCAGATGGCCCTTCAAAGGTCTGACAACCTTCTGCAGAATTTCATGCCGCTCTGTC
AAACTTTGGTGGATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT
						
					

						Genomic sequence
						
							AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG
ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACC
TTAACATTCTTCAGATCATTATCATCATCTGCCGCCCTGTGAGTTGTCCCATTACTTGAATGTA
CGATGTCCACAAATGCTGTGGGGAGTAACATTTTACAGAAGGTTGAGGTATAATCAAAATACTT
ACAAGGCATAAAAAGAAATGTACATTATCGTAAGATAATTCAATACAAAAGGAGATAATTTATA
TAAAAAAATTACTGCCAAAGTACCCAAAAGAATTACCCTGAACATCAAGGCACTCGTGCCATGG
CTTATCGTATCTCAACCGTTGAATGCGGGGGAACCTTAAGCTGTATGGGGCAGCAAATACCTTT
AATAGATTAAAAGCAGTTGGAGAGCAAATCAGCATGTTGTACAAGAACAAATCTTTCCCGAGCA
TAAGACTTTTAAAGATAGCAAAGCATCAATGTTTATCCATAATTTGATTACCTCAGATTTGATT
GTTCGAATATCGCTTGTTATGGATATTATGACTGACCTGCATTTAGTGATGCAGTATATCAGAT
GCTTCCTGAACCTGACAGATTGTCTAGCAATACACCAAGAACTCCCACATAAAACTTACTTATC
AGGGCTTTCTATCCAAACATCTGGCCTCTCCTTTGAATGGTTTGTCACTTCATAAAATCTTGGT
GGTTTTTTGGGGTATTCATTTTTCCTGATTCAGAAATAGCCAAATATGAGGGGATAAAGTGTCC
AAGTTCACACGCTCTAAGGAAGTGCGTCTGCAAAATTGTGATAGGATGCAACAGAAAAAAACAA
ACAAAAAGGTACCTGAAATGAGGCTTCAATTTGGTGACAAGAGCGTCAAGCTCTTCATCAGAAA
GACCAGTACCGACTCGGCAAAAAGAAAGAAATCTTGCAAGGAAAAAAAAACATTAAATAGGAGA
CATAACTCTTGACCTGACAGAGCATAACTATTAAGACTAACATTAGGAAAACTGCATTCCCGTT
GTTATTAAGATCTCCACACGTAGTTTTCCACAGACACCGCCAAGTATAAAAGGAGATGGTAGGG
GAAAAGGGTGTTCTTACCTTTTGGGATAACTATTGTCGTCAGAAGGCACTGCAAGACCAACTAA
AAACTGGGCAACCTATAACAGGTTAAGAATGGTCAGCACTTTTTTATAGCATTCTTCTTGAAAA
TAAGAATATCACCAATATATGCTCCCAGTAAAACAAGAAAAATGCAGTTTTTTGTCCTTGAGTG
GTTAGGAACAGATACATGCAAAAAAGTCTTAGAAAACATGGTAGGATATATAGCACCCTTGCAG
CATAGCCCTAATGTTGAAAGTGGAACAATAGATAAACTGTGTAATTCAAGATAAGAGTATGTAC
ACACCTCTCCTCCTCGACGTCCTGAGCCATAATACCCACCTAACAACAAAGGAATCGATGGCTC
AATGAATCAACAGGTGCAAAATGTTTATTATTTAGTCGGTAAGTAAGGTGGAAAGATGCTAACC
TATAATAATAACATCAAGATCAGCACCAGCATGTATATAATCAGGCTTTAATTTAAGCCACTTT
CCACTCCGGTCACCAGGTTCCCATTTGGACTCAAGGTCCTTTAGTATAATTCCCTCTTCTCTAA
GCACATAGCATATTGAATAATCAGAAAATCTGAACTGAATCATTAGTGATATGGAAAGGTTGCT
AAGTTCATCAGTGTTTGGGGAGGTAGGAAAAAACCTATTATCAACAGTGTCCTTGAAGAATTTC
TCCACATCATCAAGACTATGTGCCAAAATGGACCAGCATGGTTCATCTGCAAGTCGAAAATAGG
TTTACTATTGGACAATACAGTACTGGGCAAAGTATAACCAAAACACACTCAAGTTAGTTATATA
TTACAAGAAAGTAACTCTTGGAAACAAAATAAAGGGTTTTGCAAATAAGCAAAAAAGTGTTATG
TTAATATTCTGTGGAAAAAAAATTAGAATGGCAACTAATGTCAATCTATTGGGCATTTAACTTT
TTGCCACTTTTAAGATGTGGCAATTAAGGATTTGCCACTTGCAGTCTATGACATGTGGGACCTC
ATGTGTCTATGACATGTGGCCCAGTGGCAAATAGTTATTTATTCCATTTGAACCAGATGTACAG
TGGGCAAACTCACAAATGCATTATAAAAATGATACCTAAATTTTCATCACCTACCTGGCGGACG
ATGGATGTTCAGGCCACCTGTTGGAACTAATATTTCCAGATGGCCCTTCAAAGGTCTGACAACC
TTCTGCAGAATTTCATGCCGCTCTGTCAAACTTTGGTGGATAACACTGGTGTCTCCAGCATAAA
GAATGTCAAAAGCAACAT
						
					

			
		

Sequences
Splice junction sequence	TTCAAAGGTCTGACAACCTTCTGCAGAATTTCATGCCGCTCTGTCAAACTTTGGTGGATAACAC TGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACATaaaacattgtatttgcaaatataagtgt ttctccctttaggcctgagatgtcagtcttcataagatgtgaagggatgattgacacattcttt ttctcccc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 173 Transcript exons: 30632809-30632914,30635192-30635258 AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTTGCCGCTCTGTCAAACTTTGGT GGATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT Transcript length: 177 Transcript exons: 30632809-30632879,30635153-30635258 AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG ATGTGAATGGCCCTTCAAAGGTCTGACAACCTTCTGCAGAATTTCATGCCGCTCTGTCAAACTT TGGTGGATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT Transcript length: 197 Transcript exons: 30632809-30632914,30635168-30635258 AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTCTGACAACCTTCTGCAGAATTT CATGCCGCTCTGTCAAACTTTGGTGGATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGC AACAT Transcript length: 216 Transcript exons: 30632809-30632946,30635181-30635258 AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACC TTAACATTCTGCAGAATTTCATGCCGCTCTGTCAAACTTTGGTGGATAACACTGGTGTCTCCAG CATAAAGAATGTCAAAAGCAACAT Transcript length: 217 Transcript exons: 30632809-30632935,30635169-30635258 AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACT GACAACCTTCTGCAGAATTTCATGCCGCTCTGTCAAACTTTGGTGGATAACACTGGTGTCTCCA GCATAAAGAATGTCAAAAGCAACAT Transcript length: 218 Transcript exons: 30632809-30632926,30635159-30635258 AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTCAAAGGTC TGACAACCTTCTGCAGAATTTCATGCCGCTCTGTCAAACTTTGGTGGATAACACTGGTGTCTCC AGCATAAAGAATGTCAAAAGCAACAT Transcript length: 226 Transcript exons: 30632809-30632841,30632849-30632965,30635183-30635258 AAAACATTGTATTTGCAAATATAAGTGTTTCTCGCCTGAGATGTCAGTCTTCATAAGATGTGAA GGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACCTTAACAT TCTTCAGATCATTATCATCATCAGAATTTCATGCCGCTCTGTCAAACTTTGGTGGATAACACTG GTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT Transcript length: 226 Transcript exons: 30632809-30632957,30635182-30635258 AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACC TTAACATTCTTCAGATCATTACAGAATTTCATGCCGCTCTGTCAAACTTTGGTGGATAACACTG GTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT Transcript length: 235 Transcript exons: 30632809-30632963,30635179-30635258 AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACC TTAACATTCTTCAGATCATTATCATCACTGCAGAATTTCATGCCGCTCTGTCAAACTTTGGTGG ATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT Transcript length: 237 Transcript exons: 30632809-30632966,30635180-30635258 AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACC TTAACATTCTTCAGATCATTATCATCATCTTGCAGAATTTCATGCCGCTCTGTCAAACTTTGGT GGATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT Transcript length: 246 Transcript exons: 30632809-30632950,30635155-30635258 AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACC TTAACATTCTTCAGGCCCTTCAAAGGTCTGACAACCTTCTGCAGAATTTCATGCCGCTCTGTCA AACTTTGGTGGATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT Transcript length: 268 Transcript exons: 30632809-30632925,30635108-30635258 AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGGACGATGGAT GTTCAGGCCACCTGTTGGAACTAATATTTCCAGATGGCCCTTCAAAGGTCTGACAACCTTCTGC AGAATTTCATGCCGCTCTGTCAAACTTTGGTGGATAACACTGGTGTCTCCAGCATAAAGAATGT CAAAAGCAACAT Transcript length: 303 Transcript exons: 30632809-30632955,30635103-30635258 AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACC TTAACATTCTTCAGATCATCTGGCGGACGATGGATGTTCAGGCCACCTGTTGGAACTAATATTT CCAGATGGCCCTTCAAAGGTCTGACAACCTTCTGCAGAATTTCATGCCGCTCTGTCAAACTTTG GTGGATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT Transcript length: 305 Transcript exons: 30632809-30632867,30632870-30632970,30635114-30635258 AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCAAGAT GTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACCTT AACATTCTTCAGATCATTATCATCATCTGCCGTGGATGTTCAGGCCACCTGTTGGAACTAATAT TTCCAGATGGCCCTTCAAAGGTCTGACAACCTTCTGCAGAATTTCATGCCGCTCTGTCAAACTT TGGTGGATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT Transcript length: 311 Transcript exons: 30632809-30632979,30635119-30635258 AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACC TTAACATTCTTCAGATCATTATCATCATCTGCCGCCCTGTGAGGTTCAGGCCACCTGTTGGAAC TAATATTTCCAGATGGCCCTTCAAAGGTCTGACAACCTTCTGCAGAATTTCATGCCGCTCTGTC AAACTTTGGTGGATAACACTGGTGTCTCCAGCATAAAGAATGTCAAAAGCAACAT
Genomic sequence	AAAACATTGTATTTGCAAATATAAGTGTTTCTCCCTTTAGGCCTGAGATGTCAGTCTTCATAAG ATGTGAAGGGATGATTGACACATTCTTTTTCTCCCCCTTTTTGTTTGTTCTCGGTTGTTTTACC TTAACATTCTTCAGATCATTATCATCATCTGCCGCCCTGTGAGTTGTCCCATTACTTGAATGTA CGATGTCCACAAATGCTGTGGGGAGTAACATTTTACAGAAGGTTGAGGTATAATCAAAATACTT ACAAGGCATAAAAAGAAATGTACATTATCGTAAGATAATTCAATACAAAAGGAGATAATTTATA TAAAAAAATTACTGCCAAAGTACCCAAAAGAATTACCCTGAACATCAAGGCACTCGTGCCATGG CTTATCGTATCTCAACCGTTGAATGCGGGGGAACCTTAAGCTGTATGGGGCAGCAAATACCTTT AATAGATTAAAAGCAGTTGGAGAGCAAATCAGCATGTTGTACAAGAACAAATCTTTCCCGAGCA TAAGACTTTTAAAGATAGCAAAGCATCAATGTTTATCCATAATTTGATTACCTCAGATTTGATT GTTCGAATATCGCTTGTTATGGATATTATGACTGACCTGCATTTAGTGATGCAGTATATCAGAT GCTTCCTGAACCTGACAGATTGTCTAGCAATACACCAAGAACTCCCACATAAAACTTACTTATC AGGGCTTTCTATCCAAACATCTGGCCTCTCCTTTGAATGGTTTGTCACTTCATAAAATCTTGGT GGTTTTTTGGGGTATTCATTTTTCCTGATTCAGAAATAGCCAAATATGAGGGGATAAAGTGTCC AAGTTCACACGCTCTAAGGAAGTGCGTCTGCAAAATTGTGATAGGATGCAACAGAAAAAAACAA ACAAAAAGGTACCTGAAATGAGGCTTCAATTTGGTGACAAGAGCGTCAAGCTCTTCATCAGAAA GACCAGTACCGACTCGGCAAAAAGAAAGAAATCTTGCAAGGAAAAAAAAACATTAAATAGGAGA CATAACTCTTGACCTGACAGAGCATAACTATTAAGACTAACATTAGGAAAACTGCATTCCCGTT GTTATTAAGATCTCCACACGTAGTTTTCCACAGACACCGCCAAGTATAAAAGGAGATGGTAGGG GAAAAGGGTGTTCTTACCTTTTGGGATAACTATTGTCGTCAGAAGGCACTGCAAGACCAACTAA AAACTGGGCAACCTATAACAGGTTAAGAATGGTCAGCACTTTTTTATAGCATTCTTCTTGAAAA TAAGAATATCACCAATATATGCTCCCAGTAAAACAAGAAAAATGCAGTTTTTTGTCCTTGAGTG GTTAGGAACAGATACATGCAAAAAAGTCTTAGAAAACATGGTAGGATATATAGCACCCTTGCAG CATAGCCCTAATGTTGAAAGTGGAACAATAGATAAACTGTGTAATTCAAGATAAGAGTATGTAC ACACCTCTCCTCCTCGACGTCCTGAGCCATAATACCCACCTAACAACAAAGGAATCGATGGCTC AATGAATCAACAGGTGCAAAATGTTTATTATTTAGTCGGTAAGTAAGGTGGAAAGATGCTAACC TATAATAATAACATCAAGATCAGCACCAGCATGTATATAATCAGGCTTTAATTTAAGCCACTTT CCACTCCGGTCACCAGGTTCCCATTTGGACTCAAGGTCCTTTAGTATAATTCCCTCTTCTCTAA GCACATAGCATATTGAATAATCAGAAAATCTGAACTGAATCATTAGTGATATGGAAAGGTTGCT AAGTTCATCAGTGTTTGGGGAGGTAGGAAAAAACCTATTATCAACAGTGTCCTTGAAGAATTTC TCCACATCATCAAGACTATGTGCCAAAATGGACCAGCATGGTTCATCTGCAAGTCGAAAATAGG TTTACTATTGGACAATACAGTACTGGGCAAAGTATAACCAAAACACACTCAAGTTAGTTATATA TTACAAGAAAGTAACTCTTGGAAACAAAATAAAGGGTTTTGCAAATAAGCAAAAAAGTGTTATG TTAATATTCTGTGGAAAAAAAATTAGAATGGCAACTAATGTCAATCTATTGGGCATTTAACTTT TTGCCACTTTTAAGATGTGGCAATTAAGGATTTGCCACTTGCAGTCTATGACATGTGGGACCTC ATGTGTCTATGACATGTGGCCCAGTGGCAAATAGTTATTTATTCCATTTGAACCAGATGTACAG TGGGCAAACTCACAAATGCATTATAAAAATGATACCTAAATTTTCATCACCTACCTGGCGGACG ATGGATGTTCAGGCCACCTGTTGGAACTAATATTTCCAGATGGCCCTTCAAAGGTCTGACAACC TTCTGCAGAATTTCATGCCGCTCTGTCAAACTTTGGTGGATAACACTGGTGTCTCCAGCATAAA GAATGTCAAAAGCAACAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_005704* osi_circ_014749 osi_circ_005705* osi_circ_014750 
zma_circ_007066* zma_circ_007067* 						
					
						PMCS
						0.42387432

Conservation Information
Conserved circRNAs	osi_circ_005704* osi_circ_014749 osi_circ_005705* osi_circ_014750 zma_circ_007066* zma_circ_007067*
PMCS	0.42387432

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of EPlOSAG00000021470_circ_ig.1

Address

Any questions?

Supported by