Detail information of Solyc10g045100.1_circ_ig.4


General Information
CircRNA Name Solyc10g045100.1_circ_ig.4
ID in PlantcircBase sly_circ_003113
Alias NA
Organism Solanum lycopersicum
Position chr10: 30948599-30953232  JBrowse»
Reference genome SL2.50.38
Type   ig-circRNA
Identification method Segemehl, CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Solyc10g045100.1_circ_ig.1 Solyc10g045100.1_circ_ig.2 Solyc10g045100.1_circ_ig.3
Support reads NA
Tissues fruit
Exon boundary   No-No
Splicing signals   AT-CC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAACAATCCTAAGTTAATTTGAATCAATGAATATGAAAAGAAGGTGAAGAATGAGAAATCTTG
AATGTGAAAATAATGTCAATAAGAAGCCTTAAAGGAtttttagtacctttaccaaactctgaac
ctgttgttcatctaggtctgatgcaaggattaccggcaaagtgtcaccatttcctaagaattca
tacctaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTTTAGTACCTTTACCAAACTCTGAACCTGTTGTTCATCTAGGTCTGATGCAAGGATTACCGG
CAAAGTGTCACCATTTCCTAAGAATTCATACCTAAGATGAGGTGGGAGAGCTTTTAATTAAACT
TTTGGAGCTTCCTCTATAGATGGTTTAGCGGGTGGGGACTCGCGATTCTTCATATCAAGCTCAA
ATTTCTTCGGTTTAAACCGAACATCACCTTGGTCAAGAGCCGCGACTAATGACTCATACTCTTC
ATTGCAATTGCTACCAAAGTTCATTATCACTGTCGCTAATGCTTCGACACCTAGACGTTCTTCT
ATTTGTGTCTCAAAGGTCTCACCCATGTTGTAGGATATAGCAGATGCCGATTGGAGCTCACCAC
TCTGCCTCATGGACCTACAAATATTAAAGGTCACTTCCTCACTGTTCAACCGAAATTTCATCTG
CCCCTTTTACATGTCTACTAAGGCTCTTCCCGTAGCTAGGAATGGCCTCCCAATGATAATAGGC
ACTTCAAAATCAACCTCACAGTCAAGAATAACAAAATTGGCCGGAAAGATGAATGAATCCACTT
TTACTAGCACATCATGAAGTATCCCTATGGGCCGTTTAAGTGTTCGATTAATCATTAGTAGCCG
CATCGCAGTGGGCTTTAGGTCACCCAAACCCAAATTCTTGTAAATCGAGAGGGGCATGAGATTT
ATGCTTGCCCCCAGATCACATAATGCTTTCTCAAAATATAATAGCCCGATTGTACAAGGAATAG
TGAACGCACCTAGATCTTCTTTCTTTTGGACTAGAGATCTTGTAGCAATAGCACTACAATGCTG
CATTCTATCATCATCCTCAAAAGTAACCGATCTTTTCTTTGTGACCAAATCTTTCATAAACTTG
GCGTAACCGGGAATTTGTTCTAAAACTTCTAGCAAAGGGACATTGATAGAAAGTTGCTTCAACA
TTGTCATAAAACGCCGATATTTGCCATCCTCAGTCTTTTTCACTAATCTTTGAGGAAATGGGGG
GGGTGGCCTAGGAATGGGAGTTACCTTTTTAGGCACTTCAGCATCTTCTGCAATGTTATCCTCT
AAGTTAGCATCAACATTTACCACTTTATCAGTGTCTTTTGTCACCTCATTCTCATTAGATAACA
AAGGTGGGTCAATGATTTGCTTGCCACCGCGAGTAGTAATTGTCATACAATGTCCATCATTTAT
CAGATTTTGGACAGTGTTGCTGGGAGGAGTGCCCGGTTGCCGTGTGTTCACAGTTGCAGATAAT
TTGGCCAATTGTAAGTCAAGTTTCTTAATCGATATTGCATGTGTATCAACTTTTAGCCCAATAC
CCGCTAAATCATTCCTCAATGCTTTATTTTTCTCATCACTAGCATCGAACCTCCTCATCATTTT
ATGCAACATATCCTCAACTCGCGACATACTACCTCCACCATCCCTAGGAGTAACTTCACGATTT
TGAGGAGGGACATAGGGTTCATTCCTGCCGTTTCTATTACCATAGTTACCCATATTGAAGTTGT
TTTCTCGATTGTAGTTTCCATCTCGGACATAATGACCCTTACGATTGTAGTTACCATATTTCTA
ACCTTGGTTCCGTTGACCTTGGCGCCAATTCTCCTGATTAGAGCCTTGGTCATTTGGTCGGAAA
CCTCCCATCTGTTCATTTACTACATAGGAATCCTCGTCATAATAACACTCATCGATTTGAGGTG
GTGGTTTAGCCAAGTAGTTGACTGTATTAATCTTTTCTGTACCCCCAGTGAAATGTTTTAGTAC
CAACCCAAGCTCAGTTCTCATTTGAGCCATTTCTTCACGAATATCATCTGTGGCTAGGTTGTGA
GTGGATTGCACTGCGAAGGTCTTTCTCCCTGTATCATACTTCCTAGTACATCAAGCTTTCTTGT
TACGGGAGATTTTCTCTAATTTCTCAGCGATCTCAGCATAAGGGCATTCTCCATAAGATCCACC
TGCTATAGTGTCCAACACCGCTTTATTGTTATCATCCTGTCCCCGATAGAAGTATTCCTTCAGT
GACTCATCATCAATACGGTGATTTGGGACACTTCTCAAGAATGAGGTTAATCTATCCCAAGAAC
TACTAACTGACTCTCCTGGTAGTGCCATAAAGTGATTCACCCTGTCTTTGTGGTTTAATTTCTT
GAAGACCGGATAGTAGCGTGCTAAGAAGACATCCCGTAGTTGGTTCCAAGTGAATATGGAGTTG
TATGGGAGCTCAGTAAACCACATAGCAGCCTCTCCCGTCAGTGAGAGCGGAAACACTCTAAGAC
CTATTTCATCTAGATCCAAATCAGGCCTCCCCACACAACTTTTACACACTGCCCTTACCTTAGC
TATATGGGCATGTGGATCTTCATAAGGTAGCCCTGAAAACAAACCTCTGGCAGTAAGCATTTGC
ATCAGACTACTAGTTTCCAGCAAAGTGTGGCCTGTTGGTAGAGGAGGCAAAACCAGTGGCCCAT
CCGAATCTGCTATGTTATCATAGCCTCTATAGTATGCTTGGGGCCGTGGAGCGGGATTCTGTCC
CCTCTTTTGATGTTCACCCGGAGCATCGGGTAACATCTGACCATGAACATCAGCCGGAGCTGGG
ATGGTCTAGTTTGAATCCTCATCATTGATTCCCAAATTACGATTCATGTTTCGCATTGTACGCT
CTAGCTCGTGATCGTAGGGAAACAACGATTCTCTTCCTCTCCGTGTATTTGGCATGCAAGGAGG
ATAGTTCTGAAGAGAAATCAAAAACAATAAAACAAACTAAAATCGAGAAAATATCAACTAAACT
ATAGTAAGAAGTTCAAGTTAATCTAAAAGCTAAATTCCCCGGCAACGGCGCCAAAATTTGATAC
GCTCAAACATACTTCTCAAATGAGAAGTAAAGCGGTCGCGTCAAGTAAATAACTCAACTAGTGA
GGTTGGGATCGTTCCCACGAGGAAAATAGTCTAGACTTAACTTCAACTTGTTATTACTATTGTT
CGGTTAATGACTTTCTTAGAAACAAAAAGCACAAAAGGTGGGTTTGTATTTCCTAATGAGCAAA
CATAACTAACGAACTTGAAAGAGACACTTAACATCTTTTAATGTTGAGTTTTAATCAAGTAATC
AATGTAACTAGGGCTTACGTGTTACCCACAGGTTCATAACTTGATAGTTCTAACTATAACAATT
CTTTCCTAGTATTTTGCATGCAAAGTTATAACTTATGTATTTCTAAATCCTTGGTCCGGCATCT
AGAAAATCTCACTCCGCACCTTGGTCCGGCTACGTGTGTTGCTTTCCTAACCCTTATCCTTACC
TCATATTAAGCATCGTATTCGATATTTGACTAAGTTATTACCTTGTACCAATCAATACTAGCCT
ATTAGATAGTATACACTTAATCTATGCTAATAATTCTTTTCCTATTATCTACCTCCTTGGTCTG
ACAAGTAGCATTAAGGTGAGTTCTAAAGTTAATCATCCGTTAAAAAGACTTCTATGCGAAAGAA
TTATTAATACATGTAAGACATGATTCTAGAATTGTTATTTTAGCTAGGGTTTATCTCATTATTT
GCCTATGGGTCCCACAACCCTAGTTATGGAGTTTAGTTCCTCATAACCATAAACACAATATTCA
AATATGTTATACAAGAATTTATGTACTTGCTTCAATGAGAAAGAATAAAGTCTGAAAGTTTGCT
TGATTAATCACCAAAAATCACTTGTAAGAATCTCTAACAATCAAACACTCAAGACACAAAGTCT
AACAATATGATGTTTAATCTCACAGAGTCTAACCTCAAAAACGAGGTTTTTCGAACTATTTATA
AGAAAATAAAAACCTAATTAAACAAGGATTCTAATTACTGGAAATCTGACAAAACGCGGCTGGG
TCGACGGACCACGCGACGGATCGTCGTGGTCATGACGGACCGTCGTAGACTCCGTCGTCCCATA
CTTGGTGCAATTCTTCTGCTGCTTTCTTCATTCCCCTCTACGGCAAGTGTGACGGACCGTCATA
TGCACAACGGTCTGTCGAGAGTCTCGATTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGG
ATCACTTCTCTGATTTTCACGACGAACCTGCAAGATGGTCCGTCATAGCCATGACGGACCGTCA
CAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTATGCTG
CCACCTACGGACCGTCACAGGCACGACGGACAGTCATAAGCTCCATAGGTGGTCTCTTCTGCAT
TTTTCACTTAAAATCTCCGCATTAAGCTTTGGACAGATTTCATGCAAAACAAAGAGCAACTTAT
ATCAAAATTAGAACAAAAAGGGCTTTCGGACACACTAAACTTAACGAAAAAGTATTAATTATAT
TGTGAAACCACGGTATATAAGTTACGGTATATAAGGGTCTAAACTTTAAGAAATGACTCCTCAA
GGGCCACCCTAAGGTTCCTTGACGATAACCCAAACGTTGGACCTTCATAATGTGTCAACAATCC
TAAGTTAATTTGAATCAATGAATATGAAAAGAAGGTGAAGAATGAGAAATCTTGAATGTGAAAA
TAATGTCAATAAGAAGCCTTAAAGGA
Conservation Information
Conserved circRNAs NA
PMCS 0.104980035
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tan et al., 2017