Detail information of Os09g0346700_circ_g.5


General Information
CircRNA Name Os09g0346700_circ_g.5
ID in PlantcircBase osa_circ_038915
Alias NA
Organism Oryza sativa
Position chr9: 10858771-10860403  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os09g0346700
Parent gene annotation Protein of unknown function DUF810 family protein. (Os09t0346700
-01);Similar to predicted protein. (Os09t0346700-02)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os09t0346700-01:2
Os09t0346700-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGCCATGCCTCGTACTCTTGAGGATCAGGGATATCTGATGCCTTGAACTGCTGTAGGAATTC
TAAGGGCAAGACCATAGATTCAGCACGCCTGCCAAGctcttgtttcaaagtccgatcaacccat
cccttgagcctgtctatcctttctttaatccaaactttcaccaggttagcaattgcattttcag
cttcatat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1308
Transcript exons: 10858771-10859214,10859540-10860403
CTCTTGTTTCAAAGTCCGATCAACCCATCCCTTGAGCCTGTCTATCCTTTCTTTAATCCAAACT
TTCACCAGGTTAGCAATTGCATTTTCAGCTTCATATGGTGGCATCTCTCTGATTAATGACTTGC
CTCCATCATCACTATCCACAGAATCTTCAACTGCAATATTAACAAGATCCTTCTCTAATTTATC
AGCAGCCTTAAGCACTTGAACCGTATCTGGGGTCAGCTCTGTAAGTCCAGCTATGAACTGTTTC
AGCTCATTTCCAAAGCAAGAATGAAGGGTGGCAACAGCAACGCCTGAAGCAAGGGGATGCCATG
TCTTTAAAATTGGGCTGTACAAATTTTTCTCCTTAATTGCTAGGTCACCAATGTCCTTTGCAAG
GATAGACAGAACAGGGGTAGGGTTTCTTGATGACCGCTTGGAATCTGCTTCTTCCATTCTTTGA
GCAAAAGCTGTACGGAGTGAAGACCTTATGTAGGTCTCTATCCTGCTGCGAGCTACGTCAGTCT
CTTCTTTCCTCCTCCGACGGTATTCATGGGATATATCTTCAACAAGAACCCTTGCAGCTGACAC
TCCAATTGACACAATACCTTGCATGGACTCAATGTTACTTGTATTGAAGGTCTCATGGTAAGCC
AGAAGTCTTTTCTCTGTCCAACCCATTATTGAGCTTAAAGTTGAACTCAACACTTTGCTGTAAT
TTGGATCTTTTGTGGTTTTGGCATCCTTTGCAACTTCGGCCAACTGATTCTCCGCAGCAGAGAG
CAACTCAATATCTACTTGCCCGGACATAACAAAATGGTTGAACAATGCCCAAGCAAAGCAAAGG
TTGTGAAGCATCTGGTTAATTCCCAGAATACCCCAGGTCTTCTTTAAGAGCTCCATCACCTCAT
CAATCTCATCAACAACAGTGCCATCATCATTATCAAAGCAAGCTTCTACCAACATCTGGTATAG
ATGGAGATTCAAGGGGAAACCATCAGCCCAGTGGCATCCGTCAGAAGTCCCATCATCAGACCTA
CCAGCAAGGGACATGACAGCACTACGTAGGACCTGCATTGACTCAGAGTTTTTCCCAGTTTCAA
GTGGTCTATCGTATGCTCCACGTATAATTTGCCGCAGTCGTTGTGCAGAAACATCTGATTTGTT
CAATGGAACAAGTGGGTGAACAAGCAAACCAGCCTCAAGAAGCTTCAAGTTCCTACTCTGCCAT
GCCTCGTACTCTTGAGGATCAGGGATATCTGATGCCTTGAACTGCTGTAGGAATTCTAAGGGCA
AGACCATAGATTCAGCACGCCTGCCAAG

Genomic sequence CTCTTGTTTCAAAGTCCGATCAACCCATCCCTTGAGCCTGTCTATCCTTTCTTTAATCCAAACT
TTCACCAGGTTAGCAATTGCATTTTCAGCTTCATATGGTGGCATCTCTCTGATTAATGACTTGC
CTCCATCATCACTATCCACAGAATCTTCAACTGCAATATTAACAAGATCCTTCTCTAATTTATC
AGCAGCCTTAAGCACTTGAACCGTATCTGGGGTCAGCTCTGTAAGTCCAGCTATGAACTGTTTC
AGCTCATTTCCAAAGCAAGAATGAAGGGTGGCAACAGCAACGCCTGAAGCAAGGGGATGCCATG
TCTTTAAAATTGGGCTGTACAAATTTTTCTCCTTAATTGCTAGGTCACCAATGTCCTTTGCAAG
GATAGACAGAACAGGGGTAGGGTTTCTTGATGACCGCTTGGAATCTGCTTCTTCCATTCTCTGC
AAAGTGAAAGCTGTGTCACATTACTGTGCTACTGCACTATAGAAAAGACGTACATGAAAGGATC
AACTAGCAAGATTTGAAAAGTTCAAATTATATGGTTCAAAAGAAACAAAATTACTAATAGGATG
GCTTGAGTTTGAACAAAACAGTTTCTTGTGGTTGATTACCAGGAATCTACTTTCTAGCTTTTCT
TCCCCAAAGCGCATTAGCCATTAAAAGTAAAGATATTGCAATAATCTAAACAAGGCATCTCAGC
ATACCAAAGTATGGAATATAACATTTAATCAATATGAATCAGAGTGAGAAATAATAGGGACTTA
CTTGAGCAAAAGCTGTACGGAGTGAAGACCTTATGTAGGTCTCTATCCTGCTGCGAGCTACGTC
AGTCTCTTCTTTCCTCCTCCGACGGTATTCATGGGATATATCTTCAACAAGAACCCTTGCAGCT
GACACTCCAATTGACACAATACCTTGCATGGACTCAATGTTACTTGTATTGAAGGTCTCATGGT
AAGCCAGAAGTCTTTTCTCTGTCCAACCCATTATTGAGCTTAAAGTTGAACTCAACACTTTGCT
GTAATTTGGATCTTTTGTGGTTTTGGCATCCTTTGCAACTTCGGCCAACTGATTCTCCGCAGCA
GAGAGCAACTCAATATCTACTTGCCCGGACATAACAAAATGGTTGAACAATGCCCAAGCAAAGC
AAAGGTTGTGAAGCATCTGGTTAATTCCCAGAATACCCCAGGTCTTCTTTAAGAGCTCCATCAC
CTCATCAATCTCATCAACAACAGTGCCATCATCATTATCAAAGCAAGCTTCTACCAACATCTGG
TATAGATGGAGATTCAAGGGGAAACCATCAGCCCAGTGGCATCCGTCAGAAGTCCCATCATCAG
ACCTACCAGCAAGGGACATGACAGCACTACGTAGGACCTGCATTGACTCAGAGTTTTTCCCAGT
TTCAAGTGGTCTATCGTATGCTCCACGTATAATTTGCCGCAGTCGTTGTGCAGAAACATCTGAT
TTGTTCAATGGAACAAGTGGGTGAACAAGCAAACCAGCCTCAAGAAGCTTCAAGTTCCTACTCT
GCCATGCCTCGTACTCTTGAGGATCAGGGATATCTGATGCCTTGAACTGCTGTAGGAATTCTAA
GGGCAAGACCATAGATTCAGCACGCCTGCCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.428047067
Functional Information
Coding potential Y
Potential coding position 10860384-10858773(-)
Potential amino acid sequence MVLPLEFLQQFKASDIPDPQEYEAWQSRNLKLLEAGLLVHPLVPLNKSDVSAQRLRQIIRGAYD
RPLETGKNSESMQVLRSAVMSLAGRSDDGTSDGCHWADGFPLNLHLYQMLVEACFDNDDGTVVD
EIDEVMELLKKTWGILGINQMLHNLCFAWALFNHFVMSGQVDIELLSAAENQLAEVAKDAKTTK
DPNYSKVLSSTLSSIMGWTEKRLLAYHETFNTSNIESMQGIVSIGVSAARVLVEDISHEYRRRR
KEETDVARSRIETYIRSSLRTAFAQRMEEADSKRSSRNPTPVLSILAKDIGDLAIKEKNLYSPI
LKTWHPLASGVAVATLHSCFGNELKQFIAGLTELTPDTVQVLKAADKLEKDLVNIAVEDSVDSD
DGGKSLIREMPPYEAENAIANLVKVWIKERIDRLKGWVDRTLKQELGRRAESMVLPLEFLQQFK
ASDIPDPQEYEAWQSRNLKLLEAGLLVHPLVPLNKSDVSAQRLRQIIRGAYDRPLETGKNSESM
QVLRSAVMSLAGRSDDGTSDGCHWADGFPLNLHLYQMLVEACFDNDDGTVVDEIDEVMELLKKT
WGILGINQMLHNLCFAWALFNHFVMSGQVDIELLSAAENQLAEVAKDAKTTKDPNYSKVLSSTL
SSIMGWTEKRLLAYHETFNTSNIESMQGIVSIGVSAARVLVEDISHEYRRRRKEETDVARSRIE
TYIRSSLRTAFAQRMEEADSKRSSRNPTPVLSILAKDIGDLAIKEKNLYSPILKTWHPLASGVA
VATLHSCFGNELKQFIAGLTELTPDTVQVLKAADKLEKDLVNIAVEDSVDSDDGGKSLIREMPP
YEAENAIANLVKVWIKERIDRLKGWVDRTLKQELGRRAESMVLPLEFLQQFKASDIPDPQEYEA
WQSRNLKLLEAGLLVHPLVPLNKSDVSAQRLRQIIRGAYDRPLETGKNSESMQVLRSAVMSLAG
RSDDGTSDGCHWADGFPLNLHLYQMLVEACFDNDDGTVVDEIDEVMELLKKTWGILGINQMLHN
LCFAWALFNHFVMSGQVDIELLSAAENQLAEVAKDAKTTKDPNYSKVLSSTLSSIMGWTEKRLL
AYHETFNTSNIESMQGIVSIGVSAARVLVEDISHEYRRRRKEETDVARSRIETYIRSSLRTAFA
QRMEEADSKRSSRNPTPVLSILAKDIGDLAIKEKNLYSPILKTWHPLASGVAVATLHSCFGNEL
KQFIAGLTELTPDTVQVLKAADKLEKDLVNIAVEDSVDSDDGGKSLIREMPPYEAENAIANLVK
VWIKERIDRLKGWVDRTLKQELGRRAESMVLPLEFLQQFKASDIPDPQEYEAWQSRNLKLLEAG
LLVHPLVPLNKSDVSAQRLRQIIRGAYDRPLETGKNSESMQVLRSAVMSLAGRSDDGTSDGCHW
ADGFPLNLHLYQMLVEACFDNDDGTVVDEIDEVMELLKKTWGILGINQMLHNLCFAWALFNHFV
MSGQVDIELLSAAENQLAEVAKDAKTTKDPNYSKVLSSTLSSIMGWTEKRLLAYHETFNTSNIE
SMQGIVSIGVSAARVLVEDISHEYRRRRKEETDVARSRIETYIRSSLRTAFAQRMEEADSKRSS
RNPTPVLSILAKDIGDLAIKEKNLYSPILKTWHPLASGVAVATLHSCFGNELKQFIAGLTELTP
DTVQVLKAADKLEKDLVNIAVEDSVDSDDGGKSLIREMPPYEAENAIANLVKVWIKERIDRLKG
WVDRTLKQE(-)
Sponge-miRNAs osa-miR5079a
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017