Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os09g0346700_circ_g.5 |
| ID in PlantcircBase | osa_circ_038915 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr9: 10858771-10860403 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os09g0346700 |
| Parent gene annotation |
Protein of unknown function DUF810 family protein. (Os09t0346700 -01);Similar to predicted protein. (Os09t0346700-02) |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | 1 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os09t0346700-01:2 Os09t0346700-02:2 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.428047067 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
10860384-10858773(-) |
| Potential amino acid sequence |
MVLPLEFLQQFKASDIPDPQEYEAWQSRNLKLLEAGLLVHPLVPLNKSDVSAQRLRQIIRGAYD RPLETGKNSESMQVLRSAVMSLAGRSDDGTSDGCHWADGFPLNLHLYQMLVEACFDNDDGTVVD EIDEVMELLKKTWGILGINQMLHNLCFAWALFNHFVMSGQVDIELLSAAENQLAEVAKDAKTTK DPNYSKVLSSTLSSIMGWTEKRLLAYHETFNTSNIESMQGIVSIGVSAARVLVEDISHEYRRRR KEETDVARSRIETYIRSSLRTAFAQRMEEADSKRSSRNPTPVLSILAKDIGDLAIKEKNLYSPI LKTWHPLASGVAVATLHSCFGNELKQFIAGLTELTPDTVQVLKAADKLEKDLVNIAVEDSVDSD DGGKSLIREMPPYEAENAIANLVKVWIKERIDRLKGWVDRTLKQELGRRAESMVLPLEFLQQFK ASDIPDPQEYEAWQSRNLKLLEAGLLVHPLVPLNKSDVSAQRLRQIIRGAYDRPLETGKNSESM QVLRSAVMSLAGRSDDGTSDGCHWADGFPLNLHLYQMLVEACFDNDDGTVVDEIDEVMELLKKT WGILGINQMLHNLCFAWALFNHFVMSGQVDIELLSAAENQLAEVAKDAKTTKDPNYSKVLSSTL SSIMGWTEKRLLAYHETFNTSNIESMQGIVSIGVSAARVLVEDISHEYRRRRKEETDVARSRIE TYIRSSLRTAFAQRMEEADSKRSSRNPTPVLSILAKDIGDLAIKEKNLYSPILKTWHPLASGVA VATLHSCFGNELKQFIAGLTELTPDTVQVLKAADKLEKDLVNIAVEDSVDSDDGGKSLIREMPP YEAENAIANLVKVWIKERIDRLKGWVDRTLKQELGRRAESMVLPLEFLQQFKASDIPDPQEYEA WQSRNLKLLEAGLLVHPLVPLNKSDVSAQRLRQIIRGAYDRPLETGKNSESMQVLRSAVMSLAG RSDDGTSDGCHWADGFPLNLHLYQMLVEACFDNDDGTVVDEIDEVMELLKKTWGILGINQMLHN LCFAWALFNHFVMSGQVDIELLSAAENQLAEVAKDAKTTKDPNYSKVLSSTLSSIMGWTEKRLL AYHETFNTSNIESMQGIVSIGVSAARVLVEDISHEYRRRRKEETDVARSRIETYIRSSLRTAFA QRMEEADSKRSSRNPTPVLSILAKDIGDLAIKEKNLYSPILKTWHPLASGVAVATLHSCFGNEL KQFIAGLTELTPDTVQVLKAADKLEKDLVNIAVEDSVDSDDGGKSLIREMPPYEAENAIANLVK VWIKERIDRLKGWVDRTLKQELGRRAESMVLPLEFLQQFKASDIPDPQEYEAWQSRNLKLLEAG LLVHPLVPLNKSDVSAQRLRQIIRGAYDRPLETGKNSESMQVLRSAVMSLAGRSDDGTSDGCHW ADGFPLNLHLYQMLVEACFDNDDGTVVDEIDEVMELLKKTWGILGINQMLHNLCFAWALFNHFV MSGQVDIELLSAAENQLAEVAKDAKTTKDPNYSKVLSSTLSSIMGWTEKRLLAYHETFNTSNIE SMQGIVSIGVSAARVLVEDISHEYRRRRKEETDVARSRIETYIRSSLRTAFAQRMEEADSKRSS RNPTPVLSILAKDIGDLAIKEKNLYSPILKTWHPLASGVAVATLHSCFGNELKQFIAGLTELTP DTVQVLKAADKLEKDLVNIAVEDSVDSDDGGKSLIREMPPYEAENAIANLVKVWIKERIDRLKG WVDRTLKQE(-) |
| Sponge-miRNAs | osa-miR5079a |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |