Detail information of BGIOSGA000344_circ_ag.4


General Information
CircRNA Name BGIOSGA000344_circ_ag.4
ID in PlantcircBase osi_circ_011051
Alias Chr01:40140025_40144870(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 42493215-42498060  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA000345_circ_ag.1 BGIOSGA000345_circ_ag.2 BGIOSGA000345_circ_ag.3 BGIOSGA000345_circ_ag.4 BGIOSGA000345_circ_ag.5 BGIOSGA000345_circ_ag.6 BGIOSGA000345_circ_ag.7 BGIOSGA000345_circ_ag.8 BGIOSGA000345_circ_ag.9 BGIOSGA000345_circ_ag.10 BGIOSGA000344_circ_ag.1 BGIOSGA000344_circ_ag.2 BGIOSGA000344_circ_ag.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAAAAAAAACGAATGTAACCTGATCTTGAGCCTCCCCATCCCCAGAAAACGATGCTCCATCGC
AGTATCTTATGAAAACTCTGTTCCAGTTGTAAAAATccagaattcactgtttggttattgctga
gtatcccctcgaactcttgcgcttccatcaatttggatgaaccaagctcggtcgttttacggtt
ggaacagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGAATTCACTGTTTGGTTATTGCTGAGTATCCCCTCGAACTCTTGCGCTTCCATCAATTTGG
ATGAACCAAGCTCGGTCGTTTTACGGTTGGAACAGCTTTCGATGGTGTCGCACCAGGCTCCTCC
CTGAGCATCATTTTTCACATTTTTCAGTACAAAAATCAGCACAAACAGAATCATGCATCCGGCC
ATGCACGCAGAAAAACAAGTCACGGCAACCATGAACTGAAAGCTATCTGCGACAAGAGAAAATC
GATGGATGCACGATCGATCACCTCAAGATAGATGAGCCAGCTGTGTTCACCGGAGCCAAAGCCT
CTCTGCAGGTGATAGCCCGGTGGGCTCCCATCCAAGCACACTGCAAGCATGCAACACACAGTTC
ATGAGTTCAGGAGGACTTGATGCTATCAAGGTTCAAGCGAAAGCGTATTTGAGTTAACATGGTA
TAATTCGATTAATCACAAACAACGAGTATATATATAGAAACGGACACATGGTAAATCCTTATCT
TTACAACCAACTTATAGAAACAGAATCGAGAGAAAATCAGAGAAAACGAACAAAGAGATAACTA
GATACAAAACTAACACCCCGGTAGTTGAAGGCGAACAATCTTACAAAACTAGCAAGACACTTGG
TGAAGATGTCGGCATACTACAATAATTGCCTTAGTCTCTAACATCAGAAACCAATAATTCACTA
TACCTGCGCCCTTCTCCTGAGCGCCGGTGAGGAGGATCAGCTCGACGACGTCCGGTGCCGCTGC
CGTTGAGCGGGCAACGGCTGCCAGGAGCAGGAGCAGCAAGGGCTCCGCATATCGACGACGCGGG
AGGATCGGCATCTCGCCCGTAGCCGCAGCGCGTGTGTGGACAGAACACGTACGAGGTGGGTGGT
GGACTGGGTGGTCGATCTCGCTGGGACAGCGAGACGACGAGGAGGAGGAGGAGTATTTATAGTG
ATGAGAAAGTGAGAACCCGCCGTTGACGTCGAGTTTCGGCGAAGCACATATGCTGCAGGGATTC
CACGCTGACGAAGTCGTCGCTTCGTCGACAAGTGACCGACTTGCTTGGCTACCGTCACATCTGA
TCTGTGATCTGTCGCCGTAGTCTTGTGAACTTAACTGAACACTTTCGTCGTAATATGCACGGCT
TGCACGCTGGGTTTGGTTTTGCTCAACTGGACAACTTGTTCATTCAGAGCTTCAACTACTAGCC
TTTCGTGTGAGGCTGGAGAGGCGTCGATCAATGTCTAACTCCGGGGAACCGAAAGAAAGTTTCA
GAACAAAACATCCTTAAGGCTATGTGGAAGTGCATAGCATTTAAAAAGTTATCAATTTTTTTTA
AAAAAAATGTGAAGATAGATCAATATATAATATATCTTTCCGCTAACATGTGAGTTAAAATTCG
ATTTATACAATTCAGAACAAAAATAACAAATTTGATCATGAAATACGCGTTCTATTTATAGTCA
AATTTGTTATTTTTATTTCTATTGGTATAAGTTTTTAAATTTGCATGTTTGTGAAGTGACATAT
CACATATTGATCTATCCTACTAAAATTTTTTGATGACTTTTTAAGTAACATGCAAAAATAAGGG
GATATTCCCTTAAGGATGAATTGAGTTTTCCAGGCTATGTTTTTCTCTCAAGTTTTCCAATCTC
TACTCTCCCCTTTTTCACGCGCAAGCTTCCCAAACGGCTAAACGATGTGTATTTTTTAAATAAA
AGTTTCTATAAAAAATTATTTTAGAAAATCATATTAATATATTTTTTAAAAAAACTAATATTTA
TTTAATCATGTGCTAATAAATTGTTCCGTTTTACGTTTGTGAGAAATAAGTTCTAACTCATTGA
GAAGAACACAACCTAAGAAAGTAGGAATGAACCAAACCGTGGGCTGGAACCTAATGAGGTCATG
AGATCGAGTTGGTACCGGACTTGAACTGGTCATGGTGGAGAGGTGTAGAGTTTCAATGTTTCAT
GGAAGGTAGTGCAGGTGACCGACGGGGTGGAATCCATACGCCCCAGGCCCGAGAGGTGGTAGAA
TCCGGCGAGGGTGAGACACTGGCCATTCTCGGCCGCTGACAGCCGTATGATCCAGATAGCGCGG
TCCAGATCGAGGCGAGCTGCAGCGGTTCAGCGAGCCGATGCCGAGAATTAGGCACAAGAGGAGG
TATGGGAGTGGCACTGCCGTAGGGGCATTTTAGTTGGATGTTTGGACGCCTCTATGGCGACCGG
AGGGTTCGTTGTCGTTGACCCAGGGTCAATCTTTCTGCAGCGTCACTGCTACTGTGCCACTGTG
CCATCAAGGCATCAACGTCGCAGCATTTCTCCGTCGACGCGTGTTTTTGGTTGAGCGATGACGT
CCGGTATTGAGATACACCCTCCGTTTCAGAATATAGCAAGCTAGAACCAGTTAAGACTGTCATA
GTACTACCGAATCTTGATAGGGGCATGTTTTACTTGCAAGGTAGGTAACAATGCAACAAACACA
CTGCAACAATCATATGCAGAAGAATATGCAGCCGATGTACTGAAATATGAAGTATTCGTAGTAA
TTCCTTTTCACCCGAGATGGCCACTGTTTGACTTATTACAGGCGTCTGATTATCAGCAAAGCAT
GGCTATTAGTTGTTCACAGAACAAATGGTGAAAGATGATCTGCAGCTGCTGCTTCATCAAATAA
GCCTGCATAAATATTCAGGGAAGGGTGGTAGTCTGGGTCCAGCCCAATGTAAAATCATTTAGGC
AGCTGGCTGCTACATGTGGGGTTACACGGATACTCGCAGTCGATTTCTTTCACTTCATAGCTTC
TCTCGAAATACCAATCCCCAATAGCCTCCGCGACAGTCTGCTCCACACAAGTGCAAATAGAAAA
ATATCAATCCATCTAGAACACTACCATTATCAGAGATAAACCAACTTTAGCTACTCTTTTACAG
TCGTACAGTTCAGTGATTTTCTGTTCTGAACTTTAGGACAGTTGAGTGATTTTAACCTCACCTT
GTTACCGAGCACTGGGGAGGCCTGTGAGTTCCATGAGATGTCGAATGGCGTTTGACAGTGAGTG
AAACATGAATCAATGAAAAGACCCCAGTCCTTTTTGTCTTTCACAACCTCTATGTCATCGACAA
ATTTATTCCTGAATCCTACAATATGGAGAAGGAAAAGAATAATGAACTTTTGAGTTAAAAAAAC
AGGATAGTTACCAAATAAACCGAAACAGATTGACAAGCTTAAACCAACCATTGAATACTTGGAT
TTGTGTGGAACTACAATTTCGAATGTCAGTTTTGCAACTGGACCATGACTGTCCAGGAAAGGAT
CCATCTGGCGCAAGGGCATTTTGTATCTACAGATTATAATCATAGCTAAAACAGTGAGAGGATT
TTATCCGTTGATTTCATCTGGAAAAAATGTTAATTGTTTTTTTGCAGGAAAAAAAGGAACTATA
TATTATTCAAGAAAAAAAATTACCTGCCAAGAATCATAAGCAGAGTTCAGAATAAGCGTGGGAG
CGGTGATGCTCTTAACAAGCTCAGCAGGAAAGAAGCACTGAGAACAACAATATGTCAGTAAATT
AAACAGATTATTAAACGAATTGTTGGATTATTTATTCAATTACGGAGATAAATTAAATATTTTA
ATGAATAAACTTAATACATAATTTAAAACAAGTGGTCTAAGCAAGATAACCGAAGATTTTTTTT
GAGAAAATAATTCGTTTAAACAATCCAATAAATAATCTAAAAGGAACTAGCACCACAATAAGGA
GATATCTGTTATGGAATACAGAATACAGTAGGTATATACCTCTGTTGGATCCTTCTTTGCAAGA
CAGTCCTTTGACAAAACCTGTGTAACATTCTGGGATAAAATTCCAAAAAAAATAACTGAGTAAG
ATTGTAAAGCTGAATATGGAACGATCAGATGAGACAAACGGGCAAGCTGGCATGATAGAATCAC
TTGAAAAGAAAAGGACAACAGTTGCCAGATCTCACTGAGGTAGTATTCATAAGCACAGAAAGGA
ACAAACCACCAAAACATTTGGAATAAATTGACGAGCTCCCTTCCAAGATTTACAAAAAATAGCA
TTTTTTCTAGGTTTCACTATGTTCAACAGCTTACCTGAAGAAGAACAGTTCCATTGAATACAGA
CCACATGTGCCTCTCCCCGGATAAATCCTCACTGGAGCAGAAACTGGCACTTGAGTACAAGTAT
ACAATGCCAGTGGGTTATACTATTAATTAATTTCAAGAGGCTTACATATCAAGGAAAAATCCAG
CATCAGGAAGGCATTTAGCTGAAACCTCCTTAGAAAATCTTGCATAAAAATCATTGCAGTGCAG
TAGTGCAGCCAGACCACCAGCAGAGCAACCTGAGAGTATGGCCTGAAATGTGTACTAGAAAAAT
GAAATTCGTTGACATGGTTCTTGATCAGAGTGCCAATGAAGCACGAATGATTCTTGTCCAAACG
AATGACTCTTTGACATGGTTCTTGATCAGAGTGCCAATGAATCATGAATGACTCTTGATCAGAA
AGAGTAAAAAGAAAAATTACGACGTGTAACCTGTTTAGCAGTTGCAAGTCCTTTTCCCATTAGC
TCATTAATAACTGCTTCCCAGATGCGCAATCCTCTGAAGTGGAGTGTGCTCCCATCCTACACCG
TTGCCAATAATGTTGGATAGAATTTACCTTTTGGGAATACAAACAAAGACAGCAACCCCAAAAA
TCAATTTCAGAAAAAAAAAACGAATGTAACCTGATCTTGAGCCTCCCCATCCCCAGAAAACGAT
GCTCCATCGCAGTATCTTATGAAAACTCTGTTCCAGTTGTAAAAAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021