Plant Circular RNA Database

Detail information of Os05g0551900_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os05g0551900_circ_g.1
					
						ID in PlantcircBase
						osa_circ_028811
					
						Alias
						Os05circ17344
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 27441834-27445560  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						SMALT, Segemehl
					
						Parent gene
						
							Os05g0551801						
					
						Parent gene annotation
						
							Hypothetical gene. (Os05t0551801-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						2
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0551900-00:8
Os05t0551900-00:8
Os05t0551801-01:8

General Information
CircRNA Name	Os05g0551900_circ_g.1
ID in PlantcircBase	osa_circ_028811
Alias	Os05circ17344
Organism	Oryza sativa
Position	chr5: 27441834-27445560 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	SMALT, Segemehl
Parent gene	Os05g0551801
Parent gene annotation	Hypothetical gene. (Os05t0551801-01)
Parent gene strand	+
Alternative splicing	NA
Support reads	2
Tissues	leaf
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0551900-00:8 Os05t0551900-00:8 Os05t0551801-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CGAACTGCTGGTCGGGGCGCGCCCAGCTGCGGTCGAGCAGGTCGCTGAGGCGCTCGTTGCCGTC
GGGAGGCGCGGTGGCCGTGGCGGCGGCGGCGGTGGGctcgtcgtatcttgcagaggaaactgct
tcattattctcattttctgaatctgaaccgtcctcttcatattcctcatcaacctcaatgccct
attttgtt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCGTCGTATCTTGCAGAGGAAACTGCTTCATTATTCTCATTTTCTGAATCTGAACCGTCCTCT
TCATATTCCTCATCAACCTCAATGCCCTATTTTGTTTTGACATAAAATCAGGAAAGCATTCATC
AATGAAGACATTAACTAAAAGACATATATGATCAATTTATCACTAGCGCACCAACAGATATATG
CCTCACTGTCAAAAACATCTCTGCTGAAAAAAAATGCAGTCTAAGGGAAAGTTGTTGCCTTAAT
AATGAAATGCCAATGAATAACAACATTTGTTTTTTTGCTAAAACAATAGGTAAATATTGTGGAA
TTTAAAGGCCATTTAGTGGGCAGAGGATCAACTAAGATGCATGTTAATATGTTTTTACTCTGAT
GCAAATGGCAAAAATTACAAAAGGCATGGCATCATATTACATTTTAAGCCTACAGAAATTAGTT
TTAGTGCTGTATAATGAGAAGAAAAAAGGGTTCGTTATGCTAAATGTTTGCCTTAATTAAAACA
CAACTACTTTTCTGTAATATGAGAAATTACGTACCAAATCCAACTTCATCTGCCTTATATTGTT
TTCCAGTTCAGCTATATGCTGACTGAGGGCCTGCATAACAATTCATGAGTTTAAACAATATCAG
AAGGATGCTAAAGTTGTGTACAATGATTATCATAAAAAAAGAAGGTACTGCTCTTGCTTTTTTC
TTTTGTAGCAAACTAACCTCATGACGCTGCATTGCAACAGCACGCTTCAATGCCTTTGCTTTTG
TTAAAAGATTCCTAGGCCTTATGTTAATAGGCCTCCTATAATTCTTTCCACGGTAAAATATAAG
TGCATAGCCCTTTGTAACTCTTTCAATGGCGACTAGTATACCGCCACTCTCATACTCTAGAAGC
CGTGCCGTCTCCTCAACAAAGGGCAGAGTCTTCTGCTTTGTTATCAATTTGACAACTTCCCTGT
GCTTCCAATGCAAGTGCATATTTTCAATGACGCCATCAAAGACACCACGAATTCCTAAAATGGA
AGGGGGAATAATCAATCAATAGAAATAGTATAGAATGCTCTCCAAGGTTATTGTTCAAGAAACT
CACCAACAGGCAAGTATGCCTTAAGACGCAAACCGATTCTACGGAAAACAGATCTTTCCTCATC
TGTAATCATTTCTTTATCATCAGATGGATTAGCAAGGACCATAGAAGCTTCTATCTTTGATAGT
AACCGCTCTGCTCTATGTATTTTTGCCTGTGCCTGAACAATTGAAGAAGAAATAAAGAACATGC
ATAACAACTGATGGAAATAAATATATGTCAAATAAGCACACTGGCATACCTAGATCAACGGCAT
AATTAAAAAATGGCAATACAAAATAAGACAAGTTTTATCAGAGAACATGCAGAAAATGCTTACA
ATGGAAAGTTTGTGCTCTAGTCTCTTGAAAAGCTTTTCCTTCACTGATCTAGAAGATGCTTCTT
TCATTTCTTCTTGCTCCTTAGCAGTTACTTCCCTTCCCCAACGAGCTTGAGCCTCCTGAAATTC
AGCAAGAGTACCCGCAAGAGCATGCCCATCTAAACTGTCATCCATTGAGTGCACAACCGGAATG
CATCTTTTCTGCTCCTCTACATTCTGGATATCTTTTGTCAACTCCTCTCTTTCAGCCAAAGCAG
CTGCAACAGATGTTGGAAGGAAGTCTTTTCCACGATATATTACAATGTAGTACTTATTTCGAAG
AAGCAAGGTGCCCCCTGTTAGATTCTGAAATAATGTTAAAAAGATAAGGCTTCACTGATTCAGA
AATCCTATACAGGTTAAATCAAATATAGTGCATGAACAGTTGAACACAGTTGATTCATGGAAAC
ACACCTTTGGAACTCTATGAAAGTTCGACAAGGAATAGAACTAAACTATATGAAGCTGTCTCCA
TCATGATCTTGGTAAAGCATGATTGTCTATGATGGTGTTTAGACAAATAAAAGCATTACATTAA
GCAAGTTATATTCATTAGAGCAAGCAGTGCAGCACAATTTTGTTATTATTTTCCGAAACCCCTG
GTGTTGCTTTGGATGATTTAACAAATCATGGATTTTGTAATATTCACAGGACAAATATGGACTT
CATCAAAACCTACTGCTGAGTAAGTGAGTACTGAGTATTCCTTATAGTTGCCCCTTTTTTATCA
GGATTTTTAGTTGAATTTCTTCATGCCTCAAATACGACTAGATATATCATATATTCAGCTTAGC
TATGACAAGCAATTGTATATTTAGATATAATCTGGCAATTACCATAGTTTTCAATGTTCCTTGG
CATAAATTCTGTGAACTGTGAAGTAAGTAGGTATGCCAGTCAATGAGTCAAAACAGCAACAGCA
TGGTGTCCAAACCTTTATTTCTTCTGACATTAGCTTGTTGTTTGTATTCTGGATTCCACGTTTC
ACAGCTATTTTCACCACCAAACTCTTCTCCCAGAGCTTAACAATAGCTGCTGCAAGGCCTTGAT
GATTCCGGTTTCTCCCTTAAATGAATTTTATCAAGCAGTAGTCAGGCGTTTGCCACCAACAAAT
AAAAGCTATAATAGGGGATAAACAATATGAACACTGTCGAAATAATCACCTAGAGCAAAATGGC
ATGGAAGATCCCTTGCTAACTTCCGCAAATTAGTCAGCTCTGCATTGGTTAGGGTCAAACGCAT
TCCAGTTGGAAGAAGTCTAAATGGTGTTTTATAACCAGGAATTGTTTGAGGCAACAAGTCGGCA
TCCACAGGTAAAATGCCTGTTCCCCACCAATCCACAAAACGAGGGCCCAACTCATCAAGCATTT
GATTGAACTCCAGCTCCTCTTCAGTCATGTCCTCAGTATTCTGCATATTTAATCTGGCTGCAAT
CTCACGTTGGGTGTTTACATCCTTCCCCTGGCTATCATGCTCTGTGGGGCTTGATGCATCCGGG
ATGAACAATGTACCGTCTGCCCCTTTCACCGCTGATGAGTTACCATCCAATGTTTCAGATTTCA
AAGGCCTTTTGTAATTGCTCCCTCTGTAAACCACCATAACACTCCCAGACCTCCATATGATCAA
TCCTCCTGTCCGTCGCTGATCGATAGGCAAACGTCATGTAAGTAATCCATTTATCATGGCACAA
CTAATAACTCATCGAAAACCTCGAATTCACAGCAACAAACATAATAATTCAAGTTCAATTGCCA
CTAGAAATCACTAAACTGAACTGATATCCAAAAAAAAACATAATAGATTAAACAGTTACAACGA
GCAAGCTGCCAATGCTGATAGAAAGGGCTAATATAGCACACACCTCGACTAGCTCATGAGCAGT
TTTCATGTCGTGCGCGAGGTCCTCGTGGAACTTGAGCCGGACCAACTCTGATTTCCTCCAGGCG
TCGTGGATCTTCTCCGTGACGGCTTGCGTGACGCCCGCCTTGGGCACGGTGATGCGGTCCCGAA
GAGTCATCCCCAGCCGCCGGAGGCGACGCAGCTCCTCGTCCTCGATCGTGAGCTCGGCCAGCGA
GGGCGCCCTAACCCTCCTCCTCTTCACCCCGTCCTCCTCGTTCTCTCTTCCTCGCGCGACCTCA
TCCCTCTCCCAGGGGAGGACGGACTCGTCGAAGCTGGAGGCGGCGAACTGCTGGTCGGGGCGCG
CCCAGCTGCGGTCGAGCAGGTCGCTGAGGCGCTCGTTGCCGTCGGGAGGCGCGGTGGCCGTGGC
GGCGGCGGCGGTGGG
						
					

			
		

Sequences
Splice junction sequence	CGAACTGCTGGTCGGGGCGCGCCCAGCTGCGGTCGAGCAGGTCGCTGAGGCGCTCGTTGCCGTC GGGAGGCGCGGTGGCCGTGGCGGCGGCGGCGGTGGGctcgtcgtatcttgcagaggaaactgct tcattattctcattttctgaatctgaaccgtcctcttcatattcctcatcaacctcaatgccct attttgtt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCGTCGTATCTTGCAGAGGAAACTGCTTCATTATTCTCATTTTCTGAATCTGAACCGTCCTCT TCATATTCCTCATCAACCTCAATGCCCTATTTTGTTTTGACATAAAATCAGGAAAGCATTCATC AATGAAGACATTAACTAAAAGACATATATGATCAATTTATCACTAGCGCACCAACAGATATATG CCTCACTGTCAAAAACATCTCTGCTGAAAAAAAATGCAGTCTAAGGGAAAGTTGTTGCCTTAAT AATGAAATGCCAATGAATAACAACATTTGTTTTTTTGCTAAAACAATAGGTAAATATTGTGGAA TTTAAAGGCCATTTAGTGGGCAGAGGATCAACTAAGATGCATGTTAATATGTTTTTACTCTGAT GCAAATGGCAAAAATTACAAAAGGCATGGCATCATATTACATTTTAAGCCTACAGAAATTAGTT TTAGTGCTGTATAATGAGAAGAAAAAAGGGTTCGTTATGCTAAATGTTTGCCTTAATTAAAACA CAACTACTTTTCTGTAATATGAGAAATTACGTACCAAATCCAACTTCATCTGCCTTATATTGTT TTCCAGTTCAGCTATATGCTGACTGAGGGCCTGCATAACAATTCATGAGTTTAAACAATATCAG AAGGATGCTAAAGTTGTGTACAATGATTATCATAAAAAAAGAAGGTACTGCTCTTGCTTTTTTC TTTTGTAGCAAACTAACCTCATGACGCTGCATTGCAACAGCACGCTTCAATGCCTTTGCTTTTG TTAAAAGATTCCTAGGCCTTATGTTAATAGGCCTCCTATAATTCTTTCCACGGTAAAATATAAG TGCATAGCCCTTTGTAACTCTTTCAATGGCGACTAGTATACCGCCACTCTCATACTCTAGAAGC CGTGCCGTCTCCTCAACAAAGGGCAGAGTCTTCTGCTTTGTTATCAATTTGACAACTTCCCTGT GCTTCCAATGCAAGTGCATATTTTCAATGACGCCATCAAAGACACCACGAATTCCTAAAATGGA AGGGGGAATAATCAATCAATAGAAATAGTATAGAATGCTCTCCAAGGTTATTGTTCAAGAAACT CACCAACAGGCAAGTATGCCTTAAGACGCAAACCGATTCTACGGAAAACAGATCTTTCCTCATC TGTAATCATTTCTTTATCATCAGATGGATTAGCAAGGACCATAGAAGCTTCTATCTTTGATAGT AACCGCTCTGCTCTATGTATTTTTGCCTGTGCCTGAACAATTGAAGAAGAAATAAAGAACATGC ATAACAACTGATGGAAATAAATATATGTCAAATAAGCACACTGGCATACCTAGATCAACGGCAT AATTAAAAAATGGCAATACAAAATAAGACAAGTTTTATCAGAGAACATGCAGAAAATGCTTACA ATGGAAAGTTTGTGCTCTAGTCTCTTGAAAAGCTTTTCCTTCACTGATCTAGAAGATGCTTCTT TCATTTCTTCTTGCTCCTTAGCAGTTACTTCCCTTCCCCAACGAGCTTGAGCCTCCTGAAATTC AGCAAGAGTACCCGCAAGAGCATGCCCATCTAAACTGTCATCCATTGAGTGCACAACCGGAATG CATCTTTTCTGCTCCTCTACATTCTGGATATCTTTTGTCAACTCCTCTCTTTCAGCCAAAGCAG CTGCAACAGATGTTGGAAGGAAGTCTTTTCCACGATATATTACAATGTAGTACTTATTTCGAAG AAGCAAGGTGCCCCCTGTTAGATTCTGAAATAATGTTAAAAAGATAAGGCTTCACTGATTCAGA AATCCTATACAGGTTAAATCAAATATAGTGCATGAACAGTTGAACACAGTTGATTCATGGAAAC ACACCTTTGGAACTCTATGAAAGTTCGACAAGGAATAGAACTAAACTATATGAAGCTGTCTCCA TCATGATCTTGGTAAAGCATGATTGTCTATGATGGTGTTTAGACAAATAAAAGCATTACATTAA GCAAGTTATATTCATTAGAGCAAGCAGTGCAGCACAATTTTGTTATTATTTTCCGAAACCCCTG GTGTTGCTTTGGATGATTTAACAAATCATGGATTTTGTAATATTCACAGGACAAATATGGACTT CATCAAAACCTACTGCTGAGTAAGTGAGTACTGAGTATTCCTTATAGTTGCCCCTTTTTTATCA GGATTTTTAGTTGAATTTCTTCATGCCTCAAATACGACTAGATATATCATATATTCAGCTTAGC TATGACAAGCAATTGTATATTTAGATATAATCTGGCAATTACCATAGTTTTCAATGTTCCTTGG CATAAATTCTGTGAACTGTGAAGTAAGTAGGTATGCCAGTCAATGAGTCAAAACAGCAACAGCA TGGTGTCCAAACCTTTATTTCTTCTGACATTAGCTTGTTGTTTGTATTCTGGATTCCACGTTTC ACAGCTATTTTCACCACCAAACTCTTCTCCCAGAGCTTAACAATAGCTGCTGCAAGGCCTTGAT GATTCCGGTTTCTCCCTTAAATGAATTTTATCAAGCAGTAGTCAGGCGTTTGCCACCAACAAAT AAAAGCTATAATAGGGGATAAACAATATGAACACTGTCGAAATAATCACCTAGAGCAAAATGGC ATGGAAGATCCCTTGCTAACTTCCGCAAATTAGTCAGCTCTGCATTGGTTAGGGTCAAACGCAT TCCAGTTGGAAGAAGTCTAAATGGTGTTTTATAACCAGGAATTGTTTGAGGCAACAAGTCGGCA TCCACAGGTAAAATGCCTGTTCCCCACCAATCCACAAAACGAGGGCCCAACTCATCAAGCATTT GATTGAACTCCAGCTCCTCTTCAGTCATGTCCTCAGTATTCTGCATATTTAATCTGGCTGCAAT CTCACGTTGGGTGTTTACATCCTTCCCCTGGCTATCATGCTCTGTGGGGCTTGATGCATCCGGG ATGAACAATGTACCGTCTGCCCCTTTCACCGCTGATGAGTTACCATCCAATGTTTCAGATTTCA AAGGCCTTTTGTAATTGCTCCCTCTGTAAACCACCATAACACTCCCAGACCTCCATATGATCAA TCCTCCTGTCCGTCGCTGATCGATAGGCAAACGTCATGTAAGTAATCCATTTATCATGGCACAA CTAATAACTCATCGAAAACCTCGAATTCACAGCAACAAACATAATAATTCAAGTTCAATTGCCA CTAGAAATCACTAAACTGAACTGATATCCAAAAAAAAACATAATAGATTAAACAGTTACAACGA GCAAGCTGCCAATGCTGATAGAAAGGGCTAATATAGCACACACCTCGACTAGCTCATGAGCAGT TTTCATGTCGTGCGCGAGGTCCTCGTGGAACTTGAGCCGGACCAACTCTGATTTCCTCCAGGCG TCGTGGATCTTCTCCGTGACGGCTTGCGTGACGCCCGCCTTGGGCACGGTGATGCGGTCCCGAA GAGTCATCCCCAGCCGCCGGAGGCGACGCAGCTCCTCGTCCTCGATCGTGAGCTCGGCCAGCGA GGGCGCCCTAACCCTCCTCCTCTTCACCCCGTCCTCCTCGTTCTCTCTTCCTCGCGCGACCTCA TCCCTCTCCCAGGGGAGGACGGACTCGTCGAAGCTGGAGGCGGCGAACTGCTGGTCGGGGCGCG CCCAGCTGCGGTCGAGCAGGTCGCTGAGGCGCTCGTTGCCGTCGGGAGGCGCGGTGGCCGTGGC GGCGGCGGCGGTGGG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.139042056

Conservation Information
Conserved circRNAs	NA
PMCS	0.139042056

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							osa-miR167i-5p 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	osa-miR167i-5p
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015

circRNA

Detail information of Os05g0551900_circ_g.1

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