Detail information of AT2G02860_circ_g.1


General Information
CircRNA Name AT2G02860_circ_g.1
ID in PlantcircBase ath_circ_012616
Alias At_ciR5750
Organism Arabidpsis thaliana
Position chr2: 829482-830066  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT2G02860
Parent gene annotation Sucrose transport protein SUC3
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues leaf
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered AT2G02860.1:2
AT2G02860.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAAAGGTGCAGAATCTTGTATGCGGGTGGGCTTGTTGCTTGTAAAAGGAATCTCTTTAGCAAA
ATAGATTGTGACAAGAGTACATATAGTGAGAAAGACcttcacgtacaccttgatcatagagttc
catatgcaaactatctcctgttggatccccatggtaaacttctcttcccatccaatctgtatcg
aacagaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCACGTACACCTTGATCATAGAGTTCCATATGCAAACTATCTCCTGTTGGATCCCCATGGTA
AACTTCTCTTCCCATCCAATCTGTATCGAACAGAAAGAAGGGGAACCAGGATAACTGCAAAGAA
CAAGACCACAATCAAAAATATAACAGAAGCAAATAATTTTAAAGATCATTAAAGAGTTTAAGAA
AAGAAACAGTGTGAAATATGTAATAACTGATCATAATTTTTCTTTGGCACTCACCCATGTAAGA
GCCATGACGATAAGAACTGAGTGCATAGCCGGTGGCAAATGCCTTAAACTAGTTAGCAAATTCA
CTAAAACAGATCCAGGGCCATCAACGTAGGTCTCATCTTGATGCTCATTCTCTGAATTGCCAAA
CTGTTCATCCGTATCACGTTCCACTCTCTCATACTTGATTCCATTGGCAGTACCATTATTTAAT
TTTGAATGCTCAAGGCCTTTGGACTGGAGATCATCCAACAAAGGTGCAGAATCTTGTATGCGGG
TGGGCTTGTTGCTTGTAAAAGGAATCTCTTTAGCAAAATAGATTGTGACAAGAGTACATATAGT
GAGAAAGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.207424015
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015