Detail information of BGIOSGA016497_circ_igg.1


General Information
CircRNA Name BGIOSGA016497_circ_igg.1
ID in PlantcircBase osi_circ_014412
Alias Chr04:22883543_22884282(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 20548885-20549624  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TG-TG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAGACCTTATAAAAAGAAACAAAGGGGGCATTATTTTAGTATACCTTCAATCTCTGTTATGCA
CACTGGTAAATTTCATGCTTGTCAATCATTTTCTCAtgtaagtgtttcttatgttttgctaatt
tcagcaataattttttattctcttcccatacacaatttacatgtttaggggcttaactttttaa
aaacattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTAAGTGTTTCTTATGTTTTGCTAATTTCAGCAATAATTTTTTATTCTCTTCCCATACACAAT
TTACATGTTTAGGGGCTTAACTTTTTAAAAACATTTTCACTAATATTCATAGTTGACCCAGCAC
TTAAATTGACCCCATTCATTCAGCTTCATAAAAAAAATCTAGTTGAAGATTCCCATTCTGGTAT
TCACTTTGTAGTCTTACATGGGTGGTCTAATGGGATGGCTTGCCATGTCAGCAAAATGGATTGA
TAGTGTGGCCTGCTAAGCAAGTGTTGGGCACCATCATCATTGTACTGCAGATGAGGCTTGCTAA
ATCACCAAAACATAGGGTTTAGTTAATGCTGAAATGGAAATCCAGTGAGCGCTGACAAAATAGC
TACACTGGAAACCCTGTTGAAGTTTCTGGACCAATGGTCCTCTCTTACAACCATACTTATACAT
CACATTTGGTAGTGCATACCTCTTTTGAGAGTCTAAAAACCAAAAGGAGCTAAAATGACTCCTA
CCGATGTTTAAATACCTTAGAAACAAGATATGTAATGCAGGAGAGATGTGATGTTTAATGATGG
CAAACAATGAAATGGTCATTCATGTGCAAGTCCCCTATATTATGCAACAAGATTGAAAAAAAAT
GTAGACCTTATAAAAAGAAACAAAGGGGGCATTATTTTAGTATACCTTCAATCTCTGTTATGCA
CACTGGTAAATTTCATGCTTGTCAATCATTTTCTCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021